Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for phylogenetic tree of this column Click for multiple sequence alignment for this column Click for yn00 results for all pairs of sequences in this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for phylogenetic tree of this column Click for multiple sequence alignment for this column Click for yn00 results for all pairs of sequences in this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for phylogenetic tree of this column Click for multiple sequence alignment for this column Click for yn00 results for all pairs of sequences in this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for phylogenetic tree of this column Click for multiple sequence alignment for this column Click for yn00 results for all pairs of sequences in this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for phylogenetic tree of this column Click for multiple sequence alignment for this column Click for yn00 results for all pairs of sequences in this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for phylogenetic tree of this column Click for multiple sequence alignment for this column Click for yn00 results for all pairs of sequences in this column Click for FASTA protein sequences for this column Click for FASTA nucleotide sequences for this column Click for FASTA nucleotide sequences for this column Click for multiple sequence alignment for this column Click for FASTA nucleotide sequences for this column Click for multiple sequence alignment for this column Click for FASTA nucleotide sequences for this column Click for multiple sequence alignment for this column Email Kevin Byrne Wolfe Laboratory Website Click for information on the species in YGOB Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 95% of length of longest homolog ( 780 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence Kpol_1024.24 - s1024 complement(70274..71008,71117..71161) - complement(70274..71008,71117..71161) [780 nt, 260 aa] Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 87% of length of longest homolog ( 714 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence TPHA0C02460 - Chr3 complement(547572..548240,548386..548430) - Anc_8.372 YDR174W Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 645 nt / 687 nt ) TBLA0H03130 - Chr8 (763830..764474) - Anc_8.375 YDR177W Click for BLAST results 79% of length of longest homolog ( 2079 nt / 2646 nt ) Click for intergenic sequence TBLA0H03120 - Chr8 (759537..761615) - Anc_8.374 YDR176W Click for BLAST results Click for intergenic sequence 78% of length of longest homolog ( 783 nt / 1005 nt ) Click for intergenic sequence TBLA0H03110 - Chr8 complement(758316..759098) - Anc_8.373 YDR175C Click for BLAST results 91% of length of longest homolog ( 747 nt / 825 nt ) contains intron(s) Click for intergenic sequence TBLA0H01020 - Chr8 complement(218812..219510,219651..219698) - Anc_8.372 YDR174W Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 95% of length of longest homolog ( 651 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence NDAI0A01160 - Chr1 complement(245057..245707) -  Click for BLAST results 96% of length of longest homolog ( 2535 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence NDAI0A01170 - Chr1 complement(246363..248897) - Anc_8.374 YDR176W Click for BLAST results Click for intergenic sequence 100% of length of longest homolog ( 1005 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence NDAI0A01180 - Chr1 (249460..250464) - Anc_8.373 YDR175C Click for BLAST results 96% of length of longest homolog ( 795 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence NDAI0A01190 - Chr1 complement(250798..251592) - Anc_8.372 YDR174W Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 645 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0B03150 - Chr2 complement(544870..545514) -  Click for BLAST results 85% of length of longest homolog ( 2247 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0B03160 - Chr2 complement(545832..548078) - Anc_8.374 YDR176W Click for BLAST results 100% of length of longest homolog ( 1002 nt / 1002 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0B03170 - Chr2 complement(549001..550002) -  Click for BLAST results 92% of length of longest homolog ( 927 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0B03180 - Chr2 (550741..551667) - Anc_8.373 YDR175C Click for BLAST results 91% of length of longest homolog ( 753 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0B03190 - Chr2 complement(551913..552665) - Anc_8.372 YDR174W Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 645 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence KNAG0A04810 - Chr1 complement(689230..689874) - Anc_8.375 YDR177W Click for BLAST results 100% of length of longest homolog ( 2646 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence KNAG0A04820 - Chr1 complement(690233..692878) - Anc_8.374 YDR176W Click for BLAST results Click for intergenic sequence 96% of length of longest homolog ( 966 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence KNAG0A04830 - Chr1 (693432..694397) - Anc_8.373 YDR175C Click for BLAST results 92% of length of longest homolog ( 762 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence KNAG0A04840 - Chr1 complement(694692..695408,695676..695720) - Anc_8.372 YDR174W Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 93% of length of longest homolog ( 642 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence KAFR0B06060 - Chr2 (1251667..1252308) - Anc_8.375 YDR177W Click for BLAST results 78% of length of longest homolog ( 2070 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence KAFR0B06050 - Chr2 (1249279..1251348) - Anc_8.374 YDR176W Click for BLAST results Click for intergenic sequence 93% of length of longest homolog ( 939 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence KAFR0B06040 - Chr2 complement(1248013..1248951) - Anc_8.373 YDR175C Click for BLAST results 87% of length of longest homolog ( 717 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence KAFR0B06030 - Chr2 (1247049..1247765) - Anc_8.372 YDR174W Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 93% of length of longest homolog ( 642 nt / 687 nt ) Click for intergenic sequence CAGL0E00671g - Chr5 complement(61697..62338) - highly similar to uniprot|P21734 Saccharomyces cerevisiae YDR177w E2 ubiquitin-conjugating enzyme Click for BLAST results 94% of length of longest homolog ( 2490 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence CAGL0E00693g - Chr5 complement(62802..65291) - similar to uniprot|P32494 Saccharomyces cerevisiae YDR176w general transcriptional adaptor or co-activator Click for BLAST results Click for intergenic sequence 93% of length of longest homolog ( 930 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence CAGL0E00715g - Chr5 (65540..66469) - similar to uniprot|Q03976 Saccharomyces cerevisiae YDR175c RSM24 Click for BLAST results 100% of length of longest homolog ( 825 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence CAGL0E00737g - Chr5 complement(66978..67802) - similar to uniprot|Q03973 Saccharomyces cerevisiae YDR174w HMO1 Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 648 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence Suva_2.343 - Chr2 (608195..608842) - YDR177W (REAL) Click for BLAST results 80% of length of longest homolog ( 2106 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence Suva_2.342 - Chr2 (605774..607879) - YDR176W (REAL) Click for BLAST results Click for intergenic sequence 97% of length of longest homolog ( 972 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence Suva_2.341 - Chr2 complement(604509..605480) - YDR175C (REAL) Click for BLAST results 90% of length of longest homolog ( 741 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence Suva_2.340 - Chr2 (603426..604166) - YDR174W (REAL) Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 648 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence Skud_4.441 - Chr4 (783817..784464) - YDR177W (REAL) Click for BLAST results 79% of length of longest homolog ( 2097 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence Skud_4.440 - Chr4 (781408..783504) - YDR176W (REAL) Click for BLAST results Click for intergenic sequence 97% of length of longest homolog ( 972 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence Skud_4.439 - Chr4 complement(780153..781124) - YDR175C (REAL) Click for BLAST results 90% of length of longest homolog ( 741 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence Skud_4.438 - Chr4 (779078..779818) - YDR174W (REAL) Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 648 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence Smik_4.425 - Chr4 (772926..773573) - YDR177W (REAL) Click for BLAST results 80% of length of longest homolog ( 2109 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence Smik_4.424 - Chr4 (770506..772614) - YDR176W (REAL) Click for BLAST results Click for intergenic sequence 97% of length of longest homolog ( 972 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence Smik_4.423 - Chr4 complement(769241..770212) - YDR175C (REAL) Click for BLAST results 90% of length of longest homolog ( 741 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence Smik_4.422 - Chr4 (768179..768919) - YDR174W (REAL) Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 648 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence YDR177W (UBC1) - Chr4 (816878..817525) - Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins; plays a role in vesicle biogenesis and ER-associated protein degradation (ERAD); component of the cellular stress response Click for Info Click for BLAST results 80% of length of longest homolog ( 2109 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence YDR176W (NGG1) - Chr4 (814452..816560) - Transcriptional regulator involved in glucose repression of Gal4p-regulated genes; component of transcriptional adaptor and histone acetyltransferase complexes, the ADA complex, the SAGA complex, and the SLIK complex Click for Info Click for BLAST results Click for intergenic sequence 96% of length of longest homolog ( 960 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence YDR175C (RSM24) - Chr4 complement(813193..814152) - Mitochondrial ribosomal protein of the small subunit Click for Info Click for BLAST results 90% of length of longest homolog ( 741 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence YDR174W (HMO1) - Chr4 (812110..812850) - Chromatin associated high mobility group (HMG) family member involved in genome maintenance; rDNA-binding component of the Pol I transcription system; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase Click for Info Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Anc_8.375 Anc_8.374 Anc_8.373 Anc_8.372 Anc_RDN5 - 5S ribosomal RNA, component of the large (60S) ribosomal subunit Anc_RDN18 - 18S ribosomal RNA, component of the small (40S) ribosomal subunit Anc_RDN58 - 5.8S ribosomal RNA, component of the 60S ribosomal subunit Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 96% of length of longest homolog ( 657 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence ZYRO0C03784g - Chr3 (301102..301758) - highly similar to uniprot|P21734 Saccharomyces cerevisiae YDR177W UBC1 Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins plays a role in vesicle biogenesis and ER- associated protein degradation (ERAD) component of the cellular stress response Click for BLAST results 74% of length of longest homolog ( 1968 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence ZYRO0C03762g - Chr3 (298851..300818) - similar to uniprot|P32494 Saccharomyces cerevisiae YDR176W NGG1 Transcriptional regulator involved in glucose repression of Gal4p-regulated genes component of transcriptional adaptor and histone acetyltransferase complexes the ADA complex the SAGA complex and the SLIK complex Click for BLAST results Click for intergenic sequence 90% of length of longest homolog ( 900 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence ZYRO0C03740g - Chr3 complement(297709..298608) - similar to uniprot|Q03976 Saccharomyces cerevisiae YDR175C RSM24 Mitochondrial ribosomal protein of the small subunit Click for BLAST results 91% of length of longest homolog ( 750 nt / 825 nt ) contains intron(s) Click for intergenic sequence ZYRO0C03718g - Chr3 (296787..296831,296908..297612) - similar to uniprot|Q03973 Saccharomyces cerevisiae YDR174W HMO1 Chromatin associated high mobility group (HMG) family member involved in genome maintenance rDNA- binding component of the Pol I transcription system associates with a 5'-3' DNA helicase and Fpr1p a prolyl isomerase Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 95% of length of longest homolog ( 654 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence TDEL0F04990 - Chr6 (941804..942457) - Anc_8.375 YDR177W Click for BLAST results 73% of length of longest homolog ( 1926 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence TDEL0F04980 - Chr6 (939638..941563) - Anc_8.374 YDR176W Click for BLAST results Click for intergenic sequence 93% of length of longest homolog ( 939 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence TDEL0F04970 - Chr6 complement(938518..939456) - Anc_8.373 YDR175C Click for BLAST results 92% of length of longest homolog ( 756 nt / 825 nt ) Click for intergenic sequence Click for intergenic sequence TDEL0F04960 - Chr6 (937711..938466) - Anc_8.372 YDR174W Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 687 nt / 687 nt ) KLLA0C18656g - Chr3 (1654787..1655473) - highly similar to uniprot|P21734 Saccharomyces cerevisiae YDR177W UBC1 Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins plays a role in vesicle biogenesis and ER- associated protein degradation (ERAD) component of the cellular stress response Click for BLAST results 72% of length of longest homolog ( 1917 nt / 2646 nt ) Click for intergenic sequence KLLA0D18073g - Chr4 (1524750..1526666) - similar to uniprot|P32494 Saccharomyces cerevisiae YDR176W NGG1 Transcriptional regulator involved in glucose repression of Gal4p-regulated genes component of transcriptional adaptor and histone acetyltransferase complexes the ADA complex the SAGA complex and the SLIK complex Click for BLAST results Click for intergenic sequence 91% of length of longest homolog ( 912 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence KLLA0D18051g - Chr4 complement(1523490..1524401) - similar to uniprot|Q03976 Saccharomyces cerevisiae YDR175C RSM24 Mitochondrial ribosomal protein of the small subunit, Click for BLAST results 89% of length of longest homolog ( 735 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence KLLA0D18029g - Chr4 (1521909..1521950,1522143..1522835) [Note: K. lactis rDNA is between KLLA0D17446g and KLLA0D18029g] - similar to uniprot|Q03973 Saccharomyces cerevisiae YDR174W HMO1 Chromatin associated high mobility group (HMG) family member involved in genome maintenance rDNA- binding component of the Pol I transcription system associates with a 5'-3' DNA helicase and Fpr1p a prolyl isomerase Click for BLAST results Click for intergenic sequence 100% of length of longest homolog ( 121 nt / 121 nt ) Click for intergenic sequence Click for intergenic sequence KLLA0D17677r - Chr4 (1500571..1500691) - RDN5-1 5S rRNA 100% of length of longest homolog ( 1799 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence KLLA0D17666r - Chr4 complement(1497012..1498810) - RDN18-1 18S rRNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence KLLA0D17633r - Chr4 complement(1496627..1496784) - RDN58-1 5.8S rRNA 93% of length of longest homolog ( 636 nt / 687 nt ) ADR169C - Chr4 complement(1000734..1001369) - Non-syntenic homolog of Saccharomyces cerevisiae YDR177W (UBC1) Click for BLAST results 83% of length of longest homolog ( 2196 nt / 2646 nt ) Click for intergenic sequence AGL139W - Chr7 (451466..453661) - Syntenic homolog of Saccharomyces cerevisiae YDR176W (NGG1) Click for BLAST results Click for intergenic sequence 91% of length of longest homolog ( 912 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence AGL140C - Chr7 complement(450324..451235) - Syntenic homolog of Saccharomyces cerevisiae YDR175C (RSM24) Click for BLAST results 92% of length of longest homolog ( 759 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence AGL141W - Chr7 (449074..449115,449204..449920) [Note: A. gossypii rDNA is between AGL142C (PDR12-like) and AGL141W (HMO1)] - Syntenic homolog of Saccharomyces cerevisiae YDR174W (HMO1); 1-intron Click for BLAST results Click for intergenic sequence 100% of length of longest homolog ( 121 nt / 121 nt ) Click for intergenic sequence Click for intergenic sequence Agos_RDN5 - Chr7 (446721..446841) - 5S ribosomal RNA 100% of length of longest homolog ( 1795 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence Agos_RDN18 - Chr7 complement(443575..445369) - 18S ribosomal RNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence Agos_RDN5-8 - Chr7 complement(443210..443367) - 5.8S ribosomal RNA 93% of length of longest homolog ( 636 nt / 687 nt ) Ecym_6038 - Chr6 (73539..74174) - similar to Ashbya gossypii ADR169C Click for BLAST results 93% of length of longest homolog ( 933 nt / 1005 nt ) Click for intergenic sequence Ecym_4193 - Chr4 (400163..401095) - similar to Ashbya gossypii AGL140C Click for BLAST results 91% of length of longest homolog ( 753 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence Ecym_4194 - Chr4 complement(401693..402403,402525..402566) - similar to Ashbya gossypii AGL141W 1-intron Click for BLAST results Click for intergenic sequence 66% of length of longest homolog ( 80 nt / 121 nt ) Click for intergenic sequence Click for intergenic sequence Ecym_4198 - Chr4 complement(411146..411225) - 5S ribosomal RNA 100% of length of longest homolog ( 1796 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence Ecym_4199 - Chr4 (412588..414383) - 18S ribosomal RNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence Ecym_4200 - Chr4 (414590..414747) - 5.8S ribosomal RNA 94% of length of longest homolog ( 648 nt / 687 nt ) SAKL0A00396g - Chr1 complement(43630..44277) - highly similar to uniprot|P21734 Saccharomyces cerevisiae YDR177W UBC1 Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins plays a role in vesicle biogenesis and ER- associated protein degradation (ERAD) component of the cellular stress response Click for BLAST results 73% of length of longest homolog ( 1935 nt / 2646 nt ) Click for intergenic sequence SAKL0H14190g - Chr8 complement(1213167..1215101) - similar to uniprot|P32494 Saccharomyces cerevisiae YDR176W NGG1 Transcriptional regulator involved in glucose repression of Gal4p-regulated genes component of transcriptional adaptor and histone acetyltransferase complexes the ADA complex the SAGA complex and the SLIK complex Click for BLAST results Click for intergenic sequence 90% of length of longest homolog ( 906 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence SAKL0H14212g - Chr8 (1215345..1216250) - similar to uniprot|Q03976 Saccharomyces cerevisiae YDR175C RSM24 Mitochondrial ribosomal protein of the small subunit Click for BLAST results 91% of length of longest homolog ( 750 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence SAKL0H14234g - Chr8 complement(1216484..1217191,1217259..1217300) [Note: S. kluyveri rDNA locus is between SAKL0H14234p (HMO1) and SAKL0H14366g (RSF1-like)] - similar to uniprot|Q03973 Saccharomyces cerevisiae YDR174W HMO1 Chromatin associated high mobility group (HMG) family member involved in genome maintenance rDNA- binding component of the Pol I transcription system associates with a 5'-3' DNA helicase and Fpr1p a prolyl isomerase Click for BLAST results Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 1798 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence SAKL0H14244r - Chr8 (1223406..1225203) - RDN18-1 18S rRNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence SAKL0H14248r - Chr8 (1225430..1225587) - RDN58-1 5.8S rRNA 94% of length of longest homolog ( 648 nt / 687 nt ) KLTH0A07546g - Chr1 (635570..636217) - highly similar to uniprot|P21734 Saccharomyces cerevisiae YDR177W UBC1 Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins plays a role in vesicle biogenesis and ER- associated protein degradation (ERAD) component of the cellular stress response Click for BLAST results 74% of length of longest homolog ( 1971 nt / 2646 nt ) Click for intergenic sequence KLTH0F08976g - Chr6 complement(772024..773994) - similar to uniprot|P32494 Saccharomyces cerevisiae YDR176W NGG1 Transcriptional regulator involved in glucose repression of Gal4p-regulated genes component of transcriptional adaptor and histone acetyltransferase complexes the ADA complex the SAGA complex and the SLIK complex Click for BLAST results Click for intergenic sequence 90% of length of longest homolog ( 906 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence KLTH0F08998g - Chr6 (774288..775193) - similar to uniprot|Q03976 Saccharomyces cerevisiae YDR175C RSM24 Mitochondrial ribosomal protein of the small subunit Click for BLAST results 91% of length of longest homolog ( 753 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence KLTH0F09020g - Chr6 complement(775420..776130,776219..776260) - similar to uniprot|Q03973 Saccharomyces cerevisiae YDR174W HMO1 Chromatin associated high mobility group (HMG) family member involved in genome maintenance rDNA- binding component of the Pol I transcription system associates with a 5'-3' DNA helicase and Fpr1p a prolyl isomerase Click for BLAST results 100% of length of longest homolog ( 1581 nt / 1581 nt ) Click for intergenic sequence Click for intergenic sequence KLTH0F09042g - Chr6 complement(776944..778524) - weakly similar to uniprot|Q07904 YLR004C Saccharomyces cerevisiae YLR004C Hypothetical ORF Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 648 nt / 687 nt ) Kwal_23.6485 - s23 (1608161..1608808) - YDR177W (UBC1) - ubiquitin-conjugating enzyme [contig 18] FULL Click for BLAST results 77% of length of longest homolog ( 2043 nt / 2646 nt ) Click for intergenic sequence Kwal_23.3350 - s23 complement(255044..257086) - YDR176W (NGG1) - transcription factor; genetic and mutant analyses suggest that Ngg1p (Ada3p) is part of two transcriptional adaptor/HAT (histone acetyltransferase complexes, the 0.8 MD ADA complex and the 1.8 MD SAGA complex [contig 252] FULL Click for BLAST results Click for intergenic sequence 90% of length of longest homolog ( 906 nt / 1005 nt ) Click for intergenic sequence Click for intergenic sequence Kwal_23.3356 - s23 (257383..258288) - YDR175C (RSM24) - mitochondrial ribosome small subunit component [contig 252] FULL Click for BLAST results 92% of length of longest homolog ( 756 nt / 825 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence Kwal_YGOB_HMO1 - s23 complement258534..259247,259317..259358 - ANNOTATED BY YGOB - Click for BLAST results 100% of length of longest homolog ( 1581 nt / 1581 nt ) Click for intergenic sequence Click for intergenic sequence Kwal_23.3366 - s23 complement(260881..262461) - YLR004C - Hypothetical ORF [contig 252] FULL Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 1089 nt / 1089 nt ) Click for intergenic sequence Click for intergenic sequence YLR157C (ASP3-2) - Chr12 complement(472969..474057) - Cell-wall L-asparaginase II involved in asparagine catabolism; expression induced during nitrogen starvation; ORF contains a short non-coding RNA that enhances expression of full-length gene; reference strain S288C has four copies of ASP3 Click for Info Click for BLAST results 100% of length of longest homolog ( 1089 nt / 1089 nt ) Click for intergenic sequence Click for intergenic sequence YLR155C (ASP3-1) - Chr12 complement(469317..470405) - Cell-wall L-asparaginase II involved in asparagine catabolism; expression induced during nitrogen starvation; ORF contains a short non-coding RNA that enhances expression of full-length gene; reference strain S288C has four copies of ASP3 [Note: Scer rDNA locus is between RNH203 and ASP3-1] Click for Info Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 121 nt / 121 nt ) Click for intergenic sequence Click for intergenic sequence Scer_RDN5-1 - Chr12 (459676..459796) - 5S ribosomal RNA (5S rRNA); only complete sequence of 6 repeated RDN5 alleles; able to support viability when provided as sole form of 5S rRNA; component of the large (60S) ribosomal subunit; localized to the nucleolus via interaction with Rpl5p; may play a role in translational frame fidelity; transcription is mediated by PolIII and activated by TFIIIA and TFIIIE 100% of length of longest homolog ( 1800 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence Scer_RDN18-1 - Chr12 complement(455933..457732) - 18S ribosomal RNA (18S rRNA); component of the small (40S) ribosomal subunit; involved in codon recognition by tRNAs or the release factor eRF1 (Sup45p); encoded in the rDNA repeat (RDN1) as part of the 35S primary transcript 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence Scer_RDN58-1 - Chr12 complement(455414..455571) - 5.8S ribosomal RNA (5.8S rRNA); component of the large (60S) ribosomal subunit; encoded in the rDNA repeat (RDN1) as part of the 35S primary transcript; 3' end formation involves processing by the exosome complex while 5' end is generated by Kem1p and Rat1p Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 474 nt / 474 nt ) Click for intergenic sequence Skud_12.229 - Chr12 (436526..436999) - YOR192C-C (REPEAT) Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 243 nt / 243 nt ) contains intron(s) Click for intergenic sequence Suva_10.256 - Chr10 (460447..460638,460642..460692) - YMR011W (REAL) Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 121 nt / 121 nt ) Click for intergenic sequence Click for intergenic sequence Kafr_RDN5-1 - Chr8 complement(377192..377312) - 5S ribosomal RNA 100% of length of longest homolog ( 1798 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence Kafr_RDN18-1 - Chr8 (378804..380601) - 18S ribosomal RNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence Kafr_RDN58-1 - Chr8 (380875..381032) - 5.8S ribosomal RNA Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 121 nt / 121 nt ) Click for intergenic sequence Click for intergenic sequence Knag_RDN5-1 - Chr1 complement(304383..304503) - 5S ribosomal RNA 100% of length of longest homolog ( 1804 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence Knag_RDN18-1 - Chr1 (306629..308432) - 18S ribosomal RNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence Knag_RDN58-1 - Chr1 (308623..308780) - 5.8S ribosomal RNA Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 2085 nt / 2085 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0C02980 - Chr3 (560151..562235) [Note: like RAD34, Anc_5.340] - Anc_5.340 YDR314C Click for BLAST results 100% of length of longest homolog ( 1707 nt / 1707 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0C02990 - Chr3 (563467..565173) [Note: HXT family] -  Click for BLAST results 100% of length of longest homolog ( 876 nt / 876 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0C03000 - Chr3 complement(565439..566314) [Note: like GTT1] -  Click for BLAST results 100% of length of longest homolog ( 2112 nt / 2112 nt ) Click for intergenic sequence Click for intergenic sequence NCAS0C03010 - Chr3 complement(566481..568592) [Note: like MAM3, Anc_3.168] - Anc_3.168 YOL060C Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 121 nt / 121 nt ) Click for intergenic sequence Click for intergenic sequence Ncas_RDN5-1 - Chr3 complement(572204..572324) - 5S ribosomal RNA 100% of length of longest homolog ( 1799 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence Ncas_RDN18-1 - Chr3 (573818..575616) - 18S ribosomal RNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence Ncas_RDN58-1 - Chr3 (575896..576053) - 5.8S ribosomal RNA Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 70% of length of longest homolog ( 1464 nt / 2085 nt ) Click for intergenic sequence Click for intergenic sequence NDAI0G02330 - Chr7 (520917..522380) [Note: like RAD34, Anc_5.340] - Anc_5.340 YDR314C Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 100% of length of longest homolog ( 121 nt / 121 nt ) Click for intergenic sequence Click for intergenic sequence Ndai_RDN5-1 - Chr7 complement(524025..524145) - 5S ribosomal RNA 100% of length of longest homolog ( 1799 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence Ndai_RDN18-1 - Chr7 (525760..527558) - 18S ribosomal RNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence Ndai_RDN58-1 - Chr7 (527863..528020) - 5.8S ribosomal RNA Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 95% of length of longest homolog ( 651 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence TPHA0L00850 - Chr12 (168648..169298) - Anc_8.375 YDR177W Click for BLAST results 83% of length of longest homolog ( 2193 nt / 2646 nt ) Click for intergenic sequence Click for intergenic sequence TPHA0L00840 - Chr12 (166039..168231) - Anc_8.374 YDR176W Click for BLAST results Click for intergenic sequence 95% of length of longest homolog ( 951 nt / 1005 nt ) Click for intergenic sequence TPHA0L00830 - Chr12 complement(164715..165665) - Anc_8.373 YDR175C Click for BLAST results Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence Click for intergenic sequence 94% of length of longest homolog ( 648 nt / 687 nt ) Click for intergenic sequence Click for intergenic sequence Kpol_1030.10 - s1030 complement(21147..21794) - complement(21147..21794) [648 nt, 216 aa] Click for BLAST results 79% of length of longest homolog ( 2088 nt / 2646 nt ) contains intron(s) Click for intergenic sequence Click for intergenic sequence Kpol_1030.11 - s1030 complement(22483..24027,24077..24085,24670..25203) - complement(22483..24027,24077..24085,24670..25203) [2088 nt, 696 aa] Click for BLAST results Click for intergenic sequence 89% of length of longest homolog ( 897 nt / 1005 nt ) Click for intergenic sequence Kpol_1030.13 - s1030 (25788..26684) - (25788..26684) [897 nt, 299 aa] Click for BLAST results 100% of length of longest homolog ( 121 nt / 121 nt ) Click for intergenic sequence Kpol_1036.rrna4 - s1036 (280655..280775) - 5S rRNA 100% of length of longest homolog ( 1799 nt / 1804 nt ) Click for intergenic sequence Click for intergenic sequence Kpol_1036.rrna3 - s1036 complement(277147..278945) - SSU rRNA 100% of length of longest homolog ( 158 nt / 158 nt ) Click for intergenic sequence Click for intergenic sequence Kpol_1036.rrna2 - s1036 complement(276708..276865) - 5.8S rRNA YGOB Tabulated Text Format