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Get selected genes'

Hit NameAncStatusLength (aa)HSP LengthHSP ScoreHSP E-value
Smik_16.399singletonON25251214e-11
YPR146CsingletonOFF10925770.001
BLASTP 2.2.26 [Sep-21-2011]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Smik_16.399
         (25 letters)

Database: Seq/AA.fsa 
           114,666 sequences; 53,481,399 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Smik_16.399 Chr16 complement(697435..697509) [75 bp, 25 aa] {ON}...    51   4e-11
YPR146C Chr16 complement(825347..825676) [330 bp, 109 aa] {OFF} ...    34   0.001

>Smik_16.399 Chr16 complement(697435..697509) [75 bp, 25 aa] {ON} 
          YPR146C (REAL)
          Length = 25

 Score = 51.2 bits (121), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 25/25 (100%), Positives = 25/25 (100%)

Query: 1  STMNILRNLIISQMVTAYSCLRVHV 25
          STMNILRNLIISQMVTAYSCLRVHV
Sbjct: 1  STMNILRNLIISQMVTAYSCLRVHV 25

>YPR146C Chr16 complement(825347..825676) [330 bp, 109 aa] {OFF}
          Dubious open reading frame unlikely to encode a
          functional protein, based on available experimental and
          comparative sequence data
          Length = 109

 Score = 34.3 bits (77), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 1  STMNILRNLIISQMVTAYSCLRVHV 25
          ST++ LR+L+ISQ+V AY+C+ VHV
Sbjct: 38 STIDSLRDLMISQIVLAYNCISVHV 62

  Database: Seq/AA.fsa
    Posted date:  Aug 24, 2012  3:22 PM
  Number of letters in database: 53,481,399
  Number of sequences in database:  114,666
  
Lambda     K      H
   0.333    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 114666
Number of Hits to DB: 1,698,058
Number of extensions: 15353
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 25
Length of database: 53,481,399
Length adjustment: 0
Effective length of query: 25
Effective length of database: 53,481,399
Effective search space: 1337034975
Effective search space used: 1337034975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (27.3 bits)