Re-run this search with the SEG filter switched off

Re-run this search as BLASTX i.e. nucleotide query

Get selected genes'

Hit NameAncStatusLength (aa)HSP LengthHSP ScoreHSP E-value
Smik_15.1656.30ON1201206262e-85
YOL005C (RPB11)6.30ON1201206211e-84
Suva_15.1696.30ON1221206184e-84
Skud_15.1576.30ON1221206184e-84
CAGL0E02453g6.30ON1201206029e-82
KAFR0A051106.30ON1221205891e-79
KNAG0F029106.30ON1221205837e-79
ZYRO0C07502g6.30ON1221205839e-79
TDEL0G043906.30ON1221205786e-78
NCAS0D021206.30ON1221185776e-78
Kpol_1037.216.30ON1201205672e-76
NDAI0C026706.30ON1221205663e-76
ACL005C6.30ON1221205491e-73
TBLA0E031506.30ON1181185491e-73
Kwal_56.224726.30ON1221205422e-72
KLTH0C10934g6.30ON1221205394e-72
TPHA0J004106.30ON1201205378e-72
SAKL0E01562g6.30ON1221205361e-71
KLLA0C06160g6.30ON1211185291e-70
CAGL0L03872g2.163ON137911307e-10
TPHA0B029202.163ON1301061297e-10
TDEL0F011802.163ON129901183e-08
Kpol_165.22.163ON128921183e-08
KAFR0B045702.163ON131911141e-07
ZYRO0B09878g2.163ON130901113e-07
KNAG0I020602.163ON134901114e-07
TBLA0B012902.163ON102861094e-07
SAKL0E10692g2.163ON131901096e-07
Ecym_54232.163ON127901071e-06
YNL113W (RPC19)2.163ON1421021062e-06
Smik_14.2142.163ON1421021053e-06
Suva_14.2252.163ON1421041044e-06
NCAS0G025502.163ON150621037e-06
KLTH0D09350g2.163ON146711029e-06
AFL220C2.163ON135901019e-06
Skud_14.2182.163ON1561041021e-05
KLLA0F23760g2.163ON12768982e-05
NDAI0F027502.163ON14990983e-05
Kwal_26.84732.163ON15071983e-05
TPHA0J016707.327ON83269700.42
TBLA0J007305.604ON72689690.58
Kwal_23.58927.257ON67859661.3
TPHA0B015207.441ON115070651.8
YDL148C (NOP14)7.327ON81069652.2
CAGL0J08844g7.327ON79969633.8
YHL030W (ECM29)4.15ON186863624.4
CAGL0L07810g1.423ON59640607.9
Smik_4.877.327ON810695910.0
BLASTP 2.2.26 [Sep-21-2011]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Smik_15.165
         (120 letters)

Database: Seq/AA.fsa 
           114,666 sequences; 53,481,399 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Smik_15.165 Chr15 complement(283099..283461) [363 bp, 120 aa] {O...   245   2e-85
YOL005C Chr15 complement(315813..316175) [363 bp, 120 aa] {ON}  ...   243   1e-84
Suva_15.169 Chr15 complement(289702..290070) [369 bp, 122 aa] {O...   242   4e-84
Skud_15.157 Chr15 complement(275429..275797) [369 bp, 122 aa] {O...   242   4e-84
CAGL0E02453g Chr5 complement(233352..233714) [363 bp, 120 aa] {O...   236   9e-82
KAFR0A05110 Chr1 complement(1014087..1014455) [369 bp, 122 aa] {...   231   1e-79
KNAG0F02910 Chr6 complement(551617..551985) [369 bp, 122 aa] {ON...   229   7e-79
ZYRO0C07502g Chr3 complement(567967..568335) [369 bp, 122 aa] {O...   229   9e-79
TDEL0G04390 Chr7 complement(794577..794945) [369 bp, 122 aa] {ON...   227   6e-78
NCAS0D02120 Chr4 complement(393640..394008) [369 bp, 122 aa] {ON...   226   6e-78
Kpol_1037.21 s1037 complement(44216..44578) [363 bp, 120 aa] {ON...   223   2e-76
NDAI0C02670 Chr3 (621282..621650) [369 bp, 122 aa] {ON} Anc_6.30...   222   3e-76
ACL005C Chr3 complement(346569..346937) [369 bp, 122 aa] {ON} Sy...   216   1e-73
TBLA0E03150 Chr5 complement(788457..788813) [357 bp, 118 aa] {ON...   216   1e-73
Kwal_56.22472 s56 (144443..144811) [369 bp, 122 aa] {ON} YOL005C...   213   2e-72
KLTH0C10934g Chr3 complement(900683..901051) [369 bp, 122 aa] {O...   212   4e-72
TPHA0J00410 Chr10 (95837..96199) [363 bp, 120 aa] {ON} Anc_6.30 ...   211   8e-72
SAKL0E01562g Chr5 (120177..120545) [369 bp, 122 aa] {ON} highly ...   211   1e-71
KLLA0C06160g Chr3 complement(543239..543604) [366 bp, 121 aa] {O...   208   1e-70
CAGL0L03872g Chr12 complement(447274..447687) [414 bp, 137 aa] {...    55   7e-10
TPHA0B02920 Chr2 (666060..666452) [393 bp, 130 aa] {ON} Anc_2.16...    54   7e-10
TDEL0F01180 Chr6 (211106..211495) [390 bp, 129 aa] {ON} Anc_2.16...    50   3e-08
Kpol_165.2 s165 complement(2511..2897) [387 bp, 128 aa] {ON} com...    50   3e-08
KAFR0B04570 Chr2 complement(949880..950275) [396 bp, 131 aa] {ON...    49   1e-07
ZYRO0B09878g Chr2 complement(771644..772036) [393 bp, 130 aa] {O...    47   3e-07
KNAG0I02060 Chr9 complement(401412..401816) [405 bp, 134 aa] {ON...    47   4e-07
TBLA0B01290 Chr2 (274238..274546) [309 bp, 102 aa] {ON} Anc_2.16...    47   4e-07
SAKL0E10692g Chr5 complement(891637..892032) [396 bp, 131 aa] {O...    47   6e-07
Ecym_5423 Chr5 complement(871715..872098) [384 bp, 127 aa] {ON} ...    46   1e-06
YNL113W Chr14 (412771..413199) [429 bp, 142 aa] {ON}  RPC19RNA p...    45   2e-06
Smik_14.214 Chr14 (392413..392841) [429 bp, 142 aa] {ON} YNL113W...    45   3e-06
Suva_14.225 Chr14 (409562..409990) [429 bp, 142 aa] {ON} YNL113W...    45   4e-06
NCAS0G02550 Chr7 (456827..457279) [453 bp, 150 aa] {ON} Anc_2.16...    44   7e-06
KLTH0D09350g Chr4 complement(776115..776555) [441 bp, 146 aa] {O...    44   9e-06
AFL220C Chr6 complement(25281..25688) [408 bp, 135 aa] {ON} Synt...    44   9e-06
Skud_14.218 Chr14 (402879..403349) [471 bp, 156 aa] {ON} YNL113W...    44   1e-05
KLLA0F23760g Chr6 complement(2218555..2218938) [384 bp, 127 aa] ...    42   2e-05
NDAI0F02750 Chr6 complement(673843..674292) [450 bp, 149 aa] {ON...    42   3e-05
Kwal_26.8473 s26 complement(800017..800469) [453 bp, 150 aa] {ON...    42   3e-05
TPHA0J01670 Chr10 (384560..387058) [2499 bp, 832 aa] {ON} Anc_7....    32   0.42 
TBLA0J00730 Chr10 (169980..172160) [2181 bp, 726 aa] {ON} Anc_5....    31   0.58 
Kwal_23.5892 s23 (1358818..1360854) [2037 bp, 678 aa] {ON} YIL06...    30   1.3  
TPHA0B01520 Chr2 complement(336164..339616) [3453 bp, 1150 aa] {...    30   1.8  
YDL148C Chr4 complement(188154..190586) [2433 bp, 810 aa] {ON}  ...    30   2.2  
CAGL0J08844g Chr10 complement(873456..875855) [2400 bp, 799 aa] ...    29   3.8  
YHL030W Chr8 (40084..45690) [5607 bp, 1868 aa] {ON}  ECM29Scaffo...    28   4.4  
CAGL0L07810g Chr12 complement(859653..861443) [1791 bp, 596 aa] ...    28   7.9  
Smik_4.87 Chr4 complement(165012..167444) [2433 bp, 810 aa] {ON}...    27   10.0 

>Smik_15.165 Chr15 complement(283099..283461) [363 bp, 120 aa] {ON}
           YOL005C (REAL)
          Length = 120

 Score =  245 bits (626), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120

>YOL005C Chr15 complement(315813..316175) [363 bp, 120 aa] {ON}
           RPB11RNA polymerase II subunit B12.5; part of central
           core; similar to Rpc19p and bacterial alpha subunit
          Length = 120

 Score =  243 bits (621), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLA DDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120

>Suva_15.169 Chr15 complement(289702..290070) [369 bp, 122 aa] {ON}
           YOL005C (REAL)
          Length = 122

 Score =  242 bits (618), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 118/120 (98%), Positives = 119/120 (99%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKI+PDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIEPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLA DDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120

>Skud_15.157 Chr15 complement(275429..275797) [369 bp, 122 aa] {ON}
           YOL005C (REAL)
          Length = 122

 Score =  242 bits (618), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 118/120 (98%), Positives = 119/120 (99%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKI+PDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIEPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLA DDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120

>CAGL0E02453g Chr5 complement(233352..233714) [363 bp, 120 aa] {ON}
           highly similar to uniprot|P38902 Saccharomyces
           cerevisiae YOL005c RPB11 DNA-directed RNA polymerase II
          Length = 120

 Score =  236 bits (602), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 117/120 (97%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHPFFARFKLRIQT EGYDPKDAL+NAC+SIINKLGALK+NFETEWNLQTLA DDAF
Sbjct: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120

>KAFR0A05110 Chr1 complement(1014087..1014455) [369 bp, 122 aa] {ON}
           Anc_6.30 YOL005C
          Length = 122

 Score =  231 bits (589), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 111/120 (92%), Positives = 116/120 (96%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTK+PNAVVITFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKSPNAVVITFEKEDHTLGNLIRAELLNDTKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHPFFARFKLR+QT EGYDPK+ALKNACNSIINKLG LKTNFETEWNLQTLA+D+ F
Sbjct: 61  YKVEHPFFARFKLRVQTIEGYDPKEALKNACNSIINKLGILKTNFETEWNLQTLASDENF 120

>KNAG0F02910 Chr6 complement(551617..551985) [369 bp, 122 aa] {ON}
           Anc_6.30 YOL005C
          Length = 122

 Score =  229 bits (583), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 113/120 (94%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLG+GESKL IDPDTK+PNA+VITF KEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGDGESKLVIDPDTKSPNAIVITFNKEDHTLGNLIRAELLNDSKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHPFFARFKLRIQT EGYDPKDALKNACN IINKLG LKTNFETEWNLQTLATDD F
Sbjct: 61  YKVEHPFFARFKLRIQTVEGYDPKDALKNACNGIINKLGILKTNFETEWNLQTLATDDTF 120

>ZYRO0C07502g Chr3 complement(567967..568335) [369 bp, 122 aa] {ON}
           highly similar to uniprot|P38902 Saccharomyces
           cerevisiae YOL005C
          Length = 122

 Score =  229 bits (583), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 114/120 (95%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKL++DPDTKAPNA+V+TFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLRVDPDTKAPNAIVVTFEKEDHTLGNLIRAELLNDPKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHP FARFK+RIQT EGYDPKDALKNACN IINKLG LKTNFETEWNLQTLA+DD F
Sbjct: 61  YKVEHPLFARFKMRIQTMEGYDPKDALKNACNGIINKLGVLKTNFETEWNLQTLASDDNF 120

>TDEL0G04390 Chr7 complement(794577..794945) [369 bp, 122 aa] {ON}
           Anc_6.30 YOL005C
          Length = 122

 Score =  227 bits (578), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 113/120 (94%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKI+PDTKAPNAVVITFEKEDHTLGNLIR+ELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIEPDTKAPNAVVITFEKEDHTLGNLIRSELLNDTKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHP FARFK+RIQT EGYDPKDALKNACN IINKL  LKTNFETEWNLQTLA+DD +
Sbjct: 61  YKVEHPLFARFKMRIQTVEGYDPKDALKNACNGIINKLAVLKTNFETEWNLQTLASDDNY 120

>NCAS0D02120 Chr4 complement(393640..394008) [369 bp, 122 aa] {ON}
           Anc_6.30 YOL005C
          Length = 122

 Score =  226 bits (577), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 108/118 (91%), Positives = 113/118 (95%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKL+IDPDTKAPNAVVITFEKEDHTLGNLIR+ELLND +VLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLQIDPDTKAPNAVVITFEKEDHTLGNLIRSELLNDSRVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDD 118
           YKVEHPFFARFKLRIQT EGYDPKDALKNACNSII+KLG LK NFETEWNLQTLA D+
Sbjct: 61  YKVEHPFFARFKLRIQTVEGYDPKDALKNACNSIISKLGVLKGNFETEWNLQTLAADE 118

>Kpol_1037.21 s1037 complement(44216..44578) [363 bp, 120 aa] {ON}
           complement(44216..44578) [363 nt, 121 aa]
          Length = 120

 Score =  223 bits (567), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 107/120 (89%), Positives = 113/120 (94%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPD+FELFLLGEGESKL I+PDTKAPNAVVITFEKEDHTLGNLIR+ELLND KVLFAA
Sbjct: 1   MNAPDKFELFLLGEGESKLNIEPDTKAPNAVVITFEKEDHTLGNLIRSELLNDSKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHP FARFKLRIQT E YDPKDALKNACN+IINKLG LKTNFETEWNLQTLA+D+ F
Sbjct: 61  YKVEHPLFARFKLRIQTVENYDPKDALKNACNNIINKLGILKTNFETEWNLQTLASDENF 120

>NDAI0C02670 Chr3 (621282..621650) [369 bp, 122 aa] {ON} Anc_6.30
           YOL005C
          Length = 122

 Score =  222 bits (566), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 113/120 (94%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKL IDPDTKAPNAVVITF+KEDHTLGNLIR+ELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLTIDPDTKAPNAVVITFQKEDHTLGNLIRSELLNDGKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHPFFA FKLRIQT EGYDPK ALKNACN+IINKLG LKTNFETEWNLQTLA+D+ F
Sbjct: 61  YKVEHPFFANFKLRIQTVEGYDPKLALKNACNNIINKLGILKTNFETEWNLQTLASDENF 120

>ACL005C Chr3 complement(346569..346937) [369 bp, 122 aa] {ON}
           Syntenic homolog of Saccharomyces cerevisiae YOL005C
           (RPB11)
          Length = 122

 Score =  216 bits (549), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 101/120 (84%), Positives = 111/120 (92%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLL EGESKLKI+PDTKA NAV+ITFEKEDHTLGN+IRAELL D +VLFAA
Sbjct: 1   MNAPDRFELFLLPEGESKLKIEPDTKAANAVIITFEKEDHTLGNIIRAELLEDERVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHP FARF++RIQT EGYDPK+ALKNACNSIINKL  LK+NFETEWNLQTLA++D F
Sbjct: 61  YKVEHPLFARFRMRIQTAEGYDPKEALKNACNSIINKLATLKSNFETEWNLQTLASEDQF 120

>TBLA0E03150 Chr5 complement(788457..788813) [357 bp, 118 aa] {ON}
           Anc_6.30 YOL005C
          Length = 118

 Score =  216 bits (549), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 110/118 (93%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFE FLLGEGESKL+I+PDTKAPN VVITFEKEDHTLGNLI++ELL+D KVLFAA
Sbjct: 1   MNAPDRFESFLLGEGESKLQIEPDTKAPNTVVITFEKEDHTLGNLIKSELLHDPKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDD 118
           YKVEHP FARFK+RIQT EGYDPKDAL+ ACNSII KLG LKTNFETEWNLQTLA+DD
Sbjct: 61  YKVEHPLFARFKMRIQTVEGYDPKDALRKACNSIIKKLGILKTNFETEWNLQTLASDD 118

>Kwal_56.22472 s56 (144443..144811) [369 bp, 122 aa] {ON} YOL005C
           (RPB11) - RNA polymerase II subunit, homologous to S.
           pombe Rpb11p subunit [contig 185] FULL
          Length = 122

 Score =  213 bits (542), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 111/120 (92%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLL EGE+KLKIDPDTKAPNAV++TFEKEDHTL NLIRAELL D+ VLFAA
Sbjct: 1   MNAPDRFELFLLPEGEAKLKIDPDTKAPNAVIVTFEKEDHTLANLIRAELLEDKGVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHP FA+FK+RIQT EGYDPKDALKNACN II+KLG L++NFETEWNLQTLA++D +
Sbjct: 61  YKVEHPLFAQFKMRIQTAEGYDPKDALKNACNGIISKLGQLQSNFETEWNLQTLASEDNY 120

>KLTH0C10934g Chr3 complement(900683..901051) [369 bp, 122 aa] {ON}
           highly similar to uniprot|P38902 Saccharomyces
           cerevisiae YOL005C
          Length = 122

 Score =  212 bits (539), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 110/120 (91%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLL EGE+KLKIDPDTKAPNAV++TFEKEDHTL NLIR ELL D+ VLFAA
Sbjct: 1   MNAPDRFELFLLPEGEAKLKIDPDTKAPNAVIVTFEKEDHTLANLIRGELLEDKGVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHP FA+FKLRIQT EGYDPKDALKNACN II+KLG L++NFETEWNLQTLA++D +
Sbjct: 61  YKVEHPLFAQFKLRIQTVEGYDPKDALKNACNGIISKLGQLQSNFETEWNLQTLASEDNY 120

>TPHA0J00410 Chr10 (95837..96199) [363 bp, 120 aa] {ON} Anc_6.30
           YOL005C
          Length = 120

 Score =  211 bits (537), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 109/120 (90%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLL EG+SKL+I+ DTKA NAVVITFEKEDHTLGNLIR ELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLDEGQSKLQIEQDTKAANAVVITFEKEDHTLGNLIRNELLNDEKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHP FARFKLRIQT E YDPKDALK ACN+IINKLG LKTNF+TEWNLQTLA+DD F
Sbjct: 61  YKVEHPLFARFKLRIQTEENYDPKDALKMACNNIINKLGILKTNFDTEWNLQTLASDDNF 120

>SAKL0E01562g Chr5 (120177..120545) [369 bp, 122 aa] {ON} highly
           similar to uniprot|P38902 Saccharomyces cerevisiae
           YOL005C
          Length = 122

 Score =  211 bits (536), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 111/120 (92%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLL EGESKL I+PDTKAPNAV+ITFEKEDHTLGNLIRAELL D++VLFAA
Sbjct: 1   MNAPDRFELFLLPEGESKLNIEPDTKAPNAVIITFEKEDHTLGNLIRAELLEDQRVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120
           YKVEHP FARFK+RIQT EGYDPKDALKNACN+II KL  L++NFETEW+LQTLA+++ +
Sbjct: 61  YKVEHPLFARFKMRIQTVEGYDPKDALKNACNNIITKLAQLQSNFETEWSLQTLASEENY 120

>KLLA0C06160g Chr3 complement(543239..543604) [366 bp, 121 aa] {ON}
           highly similar to uniprot|P38902 Saccharomyces
           cerevisiae YOL005C
          Length = 121

 Score =  208 bits (529), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 108/118 (91%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLL EGESKLK++ DTKA +A+++TFEKEDHTLGNLIRAELL D  VLFAA
Sbjct: 1   MNAPDRFELFLLPEGESKLKVEQDTKASSAIIVTFEKEDHTLGNLIRAELLEDEGVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDD 118
           YKVEHP FA+FK+RIQT EGYDPKDALKNACNSIINKL  L++NFETEWNLQTLAT+D
Sbjct: 61  YKVEHPLFAKFKMRIQTVEGYDPKDALKNACNSIINKLAQLQSNFETEWNLQTLATED 118

>CAGL0L03872g Chr12 complement(447274..447687) [414 bp, 137 aa] {ON}
           similar to uniprot|P28000 Saccharomyces cerevisiae
           YNL113w RPC19 DNA-directed RNA polymerase I III
          Length = 137

 Score = 54.7 bits (130), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 17  SKLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLR 74
           +K+K+ P   + +    +F+  +EDHTLGN +R  ++ + +V F  Y + HP      LR
Sbjct: 41  TKIKLLPQATSEDGTCASFQIAQEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEELLNLR 100

Query: 75  IQTTEGYDPKDALKNACNSIINKLGALKTNF 105
           IQT       DAL+   + +I+   A+K  F
Sbjct: 101 IQTYGNITAVDALQKGLDDLIDLCDAVKDKF 131

>TPHA0B02920 Chr2 (666060..666452) [393 bp, 130 aa] {ON} Anc_2.163
           YNL113W
          Length = 130

 Score = 54.3 bits (129), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 2   NAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFA 59
           + P+  E+ +    E K+KI P+  +P+    +F+  +EDHTLGN +R  ++ + +V F 
Sbjct: 18  SVPEVDEVDVNAVDEDKIKILPNATSPDGTSASFQISEEDHTLGNALRHIIMKNPEVEFC 77

Query: 60  AYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
            Y + HP      LRIQT       +AL+     +++    ++  F
Sbjct: 78  GYSIPHPSETLLNLRIQTYGNTTAVEALQKGLKDLMDMCDVVEEKF 123

>TDEL0F01180 Chr6 (211106..211495) [390 bp, 129 aa] {ON} Anc_2.163
           YNL113W
          Length = 129

 Score = 50.1 bits (118), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRI 75
           K+K+ P   + +    +F+  +EDHTLGN +R  ++ ++ V F  Y + HP      LRI
Sbjct: 33  KIKLLPQASSEDGTCASFQIAEEDHTLGNALRYVIMKNKDVEFCGYSIPHPSENLLNLRI 92

Query: 76  QTTEGYDPKDALKNACNSIINKLGALKTNF 105
           QT       D L+     +++   A++  F
Sbjct: 93  QTYGATTAVDVLQKGLTDLMDLCDAVEDRF 122

>Kpol_165.2 s165 complement(2511..2897) [387 bp, 128 aa] {ON}
           complement(2511..2897) [387 nt, 129 aa]
          Length = 128

 Score = 50.1 bits (118), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 16  ESKLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKL 73
           E K+KI P   + +    +F+   EDHTLGN +R  ++ + +V F  Y + HP      L
Sbjct: 30  EDKIKILPQATSEDGTCASFQIMDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENLLNL 89

Query: 74  RIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
           RIQT       +AL+     +++    ++  F
Sbjct: 90  RIQTYGSTTAVEALQKGLGDLMDMCDVVEEKF 121

>KAFR0B04570 Chr2 complement(949880..950275) [396 bp, 131 aa] {ON}
           Anc_2.163 YNL113W
          Length = 131

 Score = 48.5 bits (114), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 17  SKLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLR 74
           +K+KI P   + +    +F+  +EDHTLGN +R  ++ + +V F  Y + HP      +R
Sbjct: 34  NKIKILPQATSEDGTSASFQIVEEDHTLGNALRYIIMKNPQVEFCGYSIPHPSENLLNIR 93

Query: 75  IQTTEGYDPKDALKNACNSIINKLGALKTNF 105
           IQT       DALK     +++    ++  F
Sbjct: 94  IQTYGEITAVDALKKGLADLMDLCDVVEETF 124

>ZYRO0B09878g Chr2 complement(771644..772036) [393 bp, 130 aa] {ON}
           highly similar to uniprot|Q755Q7 Ashbya gossypii AFL220C
           AFL220Cp and similar to YNL113W uniprot|P28000
           Saccharomyces cerevisiae YNL113W RPC19 RNA polymerase
           subunit common to RNA polymerases I and III
          Length = 130

 Score = 47.4 bits (111), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRI 75
           K+KI P   + +    +F+  +EDHTLGN +R  ++ +  V F  Y + HP      +R+
Sbjct: 34  KIKILPQATSEDGTCASFQIAEEDHTLGNALRYMIMKNPDVEFCGYSIPHPSENLLNIRV 93

Query: 76  QTTEGYDPKDALKNACNSIINKLGALKTNF 105
           QT       D L      +++   A++  F
Sbjct: 94  QTYGNVTAVDVLHKGLQDLMDLCDAVEDKF 123

>KNAG0I02060 Chr9 complement(401412..401816) [405 bp, 134 aa] {ON}
           Anc_2.163 YNL113W
          Length = 134

 Score = 47.4 bits (111), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRI 75
           K+KI P+    +    +F+   EDHTLGN +R  ++ + +V F  Y + HP      +RI
Sbjct: 38  KVKILPEATTEDGTCASFQILNEDHTLGNALRYVIMKNPEVEFCGYSIPHPSENWLNVRI 97

Query: 76  QTTEGYDPKDALKNACNSIINKLGALKTNF 105
           QT       DA K     +++    ++  F
Sbjct: 98  QTYGKITAVDAFKKGLGDLMDMCDVVEDVF 127

>TBLA0B01290 Chr2 (274238..274546) [309 bp, 102 aa] {ON} Anc_2.163
           YNL113W
          Length = 102

 Score = 46.6 bits (109), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 38/86 (44%)

Query: 20  KIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTE 79
           ++ P T   +A       EDHTLGN +R  L+ +  V F  Y + HP      LR+QT  
Sbjct: 10  QLPPVTPDGSAASFQIRDEDHTLGNALRYLLMRNPAVEFCGYSIPHPSEPFLNLRVQTYG 69

Query: 80  GYDPKDALKNACNSIINKLGALKTNF 105
                DAL      +++    ++  F
Sbjct: 70  DITASDALAQGLQDLMDLCDVVEDTF 95

>SAKL0E10692g Chr5 complement(891637..892032) [396 bp, 131 aa] {ON}
           highly similar to uniprot|P28000 Saccharomyces
           cerevisiae YNL113W RPC19 RNA polymerase subunit common
           to RNA polymerases I and III
          Length = 131

 Score = 46.6 bits (109), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRI 75
           K+K+ P   + +    +F+  +EDHTLGN +R  ++ + +V F  Y + HP      +RI
Sbjct: 35  KIKLLPQATSDDGTSASFQISEEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENLLNVRI 94

Query: 76  QTTEGYDPKDALKNACNSIINKLGALKTNF 105
           QT       +AL+     +++   A++  F
Sbjct: 95  QTYGKITAVEALQKGLQDLMDMCDAVEDKF 124

>Ecym_5423 Chr5 complement(871715..872098) [384 bp, 127 aa] {ON}
           similar to Ashbya gossypii AFL220C
          Length = 127

 Score = 45.8 bits (107), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRI 75
           K+++ P+  + +    +F+   EDHTLGN +R  ++ + +V F  Y + HP      LRI
Sbjct: 31  KIRLLPEAASEDGTCASFQISDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSETVLNLRI 90

Query: 76  QTTEGYDPKDALKNACNSIINKLGALKTNF 105
           QT       +AL      +++    ++  F
Sbjct: 91  QTYGKMTAVEALHKGLKDLMDLCDVVEDKF 120

>YNL113W Chr14 (412771..413199) [429 bp, 142 aa] {ON}  RPC19RNA
           polymerase subunit AC19, common to RNA polymerases I and
           III
          Length = 142

 Score = 45.4 bits (106), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 4   PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKV 63
           PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ +  V F  Y +
Sbjct: 42  PDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYVIMKNPDVEFCGYSI 93

Query: 64  EHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
            HP      +RIQT       DAL+     +++    +++ F
Sbjct: 94  PHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKF 135

>Smik_14.214 Chr14 (392413..392841) [429 bp, 142 aa] {ON} YNL113W
           (REAL)
          Length = 142

 Score = 45.1 bits (105), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 4   PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKV 63
           PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ +  V F  Y +
Sbjct: 42  PDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYIIMKNPDVEFCGYSI 93

Query: 64  EHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
            HP      +RIQT       DAL+     +++    +++ F
Sbjct: 94  PHPSENLLNIRIQTYGESTAVDALQKGLKDLMDLCDVVESKF 135

>Suva_14.225 Chr14 (409562..409990) [429 bp, 142 aa] {ON} YNL113W
           (REAL)
          Length = 142

 Score = 44.7 bits (104), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 2   NAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAY 61
           + PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ + +V F  Y
Sbjct: 40  DEPDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYIIMKNPEVEFCGY 91

Query: 62  KVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
            + HP      +RIQT       +AL+     +++    +++ F
Sbjct: 92  SIPHPSENLLNVRIQTYGAITAVEALQKGLKDLMDLCDVVESKF 135

>NCAS0G02550 Chr7 (456827..457279) [453 bp, 150 aa] {ON} Anc_2.163
           YNL113W
          Length = 150

 Score = 44.3 bits (103), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRI 75
           K+KI P+  + +    +F+   EDHTLGN +R  ++ +  V F  Y + HP      +RI
Sbjct: 54  KVKILPEGASEDGTCASFQIVDEDHTLGNALRYIIMKNPNVEFCGYSIPHPSENFLNVRI 113

Query: 76  QT 77
           QT
Sbjct: 114 QT 115

>KLTH0D09350g Chr4 complement(776115..776555) [441 bp, 146 aa] {ON}
           some similarities with uniprot|P28000 Saccharomyces
           cerevisiae YNL113W RPC19 RNA polymerase subunit common
           to RNA polymerases I and III
          Length = 146

 Score = 43.9 bits (102), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 35  FEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSI 94
             +EDHTLGN +R  ++ +  V F  Y + HP      LRIQT   +   + L+     +
Sbjct: 69  ISEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETLLNLRIQTYGKFTAVEVLQKGLQDL 128

Query: 95  INKLGALKTNF 105
           ++   A++  F
Sbjct: 129 MDLCDAVEDKF 139

>AFL220C Chr6 complement(25281..25688) [408 bp, 135 aa] {ON}
           Syntenic homolog of Saccharomyces cerevisiae YNL113W
           (RPC19)
          Length = 135

 Score = 43.5 bits (101), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRI 75
           K+++ P   + +     F+   EDHTLGN +R  ++ + +V F  Y + HP      +RI
Sbjct: 39  KIRLLPQATSEDGTCAFFQITDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENFLNIRI 98

Query: 76  QTTEGYDPKDALKNACNSIINKLGALKTNF 105
           QT       DAL      +++    ++  F
Sbjct: 99  QTYGKVTAVDALHKGLQDLMDMCDVVEDKF 128

>Skud_14.218 Chr14 (402879..403349) [471 bp, 156 aa] {ON} YNL113W
           (REAL)
          Length = 156

 Score = 43.9 bits (102), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 2   NAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAY 61
           + PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ +  V F  Y
Sbjct: 54  DEPDREKIKLLTQATS----EDGTNASFQIV----EEDHTLGNALRYIIMKNPDVEFCGY 105

Query: 62  KVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
            + HP      +RIQT       DAL+     +++    ++  F
Sbjct: 106 SIPHPSENLLNIRIQTYGEITAVDALQKGLKDLMDLCDVVEAKF 149

>KLLA0F23760g Chr6 complement(2218555..2218938) [384 bp, 127 aa]
           {ON} similar to uniprot|P28000 Saccharomyces cerevisiae
           YNL113W RPC19 RNA polymerase subunit common to RNA
           polymerases I and III
          Length = 127

 Score = 42.4 bits (98), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 38  EDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINK 97
           EDHTLGN +R  ++ + +V F  Y + HP      +RIQT       +AL      +++ 
Sbjct: 53  EDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKGLGDLMDM 112

Query: 98  LGALKTNF 105
             A++  F
Sbjct: 113 CDAVEDRF 120

>NDAI0F02750 Chr6 complement(673843..674292) [450 bp, 149 aa] {ON}
           Anc_2.163 YNL113W
          Length = 149

 Score = 42.4 bits (98), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRI 75
           K+KI     + +    +F+  +EDHTLGN +R  ++ + +V F  Y + HP      +RI
Sbjct: 53  KIKILQQGASEDGCSASFQILQEDHTLGNALRYIIMKNPQVEFCGYSIPHPSEEFLNIRI 112

Query: 76  QTTEGYDPKDALKNACNSIINKLGALKTNF 105
           QT       +AL      +++    ++  F
Sbjct: 113 QTYGEITAVEALHKGLQDLMDLCDVVEEKF 142

>Kwal_26.8473 s26 complement(800017..800469) [453 bp, 150 aa] {ON}
           YNL113W (RPC19) - subunit common to RNA polymerases I
           (A) and III (C) [contig 61] FULL
          Length = 150

 Score = 42.4 bits (98), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 35  FEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSI 94
             +EDHTLGN +R  ++ +  V F  Y + HP      LRIQT   +   + L+     +
Sbjct: 73  ISEEDHTLGNSLRYIIMKNPDVEFCGYSIPHPSENLLNLRIQTYGKHTALEVLQKGLQDL 132

Query: 95  INKLGALKTNF 105
           ++   A++  F
Sbjct: 133 MDLCDAVEDKF 143

>TPHA0J01670 Chr10 (384560..387058) [2499 bp, 832 aa] {ON} Anc_7.327
           YDL148C
          Length = 832

 Score = 31.6 bits (70), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 34/69 (49%)

Query: 44  NLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKT 103
           N ++A+L  +RK      + +  F AR ++  Q  E  + +  + +  N+I  + GA K 
Sbjct: 761 NKVKAQLKKERKFTMKEIRKDSRFEARQRIEKQKKESDEYRSKMSHIINTINTEEGAEKN 820

Query: 104 NFETEWNLQ 112
            +E E  L+
Sbjct: 821 KYEREKRLR 829

>TBLA0J00730 Chr10 (169980..172160) [2181 bp, 726 aa] {ON} Anc_5.604
           YOR022C
          Length = 726

 Score = 31.2 bits (69), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 13/89 (14%)

Query: 40  HTLGNLIRAELLNDRKVLFAAYKVEHPFF-----ARFKLRIQTTEGYDPKDALKNACNSI 94
           H+LGNLI  +LLN+ K     +KV + F        FKL IQ T      D + N     
Sbjct: 499 HSLGNLILFDLLNNTKKYSLNFKVGNYFCLGSPAGVFKL-IQRTN----IDGINNKAGKE 553

Query: 95  INKLGALKTNFETE---WNLQTLATDDAF 120
           + K   LK  ++ E   W  QTL   + +
Sbjct: 554 LGKRKKLKQKYQLEIDNWQTQTLPCKELY 582

>Kwal_23.5892 s23 (1358818..1360854) [2037 bp, 678 aa] {ON} YIL067C
           - Hypothetical ORF [contig 11] FULL
          Length = 678

 Score = 30.0 bits (66), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 41  TLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLG 99
           T G+L+R E  N  K    AY  EHP    +++   T + ++  DA     N I   +G
Sbjct: 547 TRGSLLRGEAGNSWKPPVLAYNQEHPHLLNWQVTNSTEKSFEKLDAYSLLINDIERYVG 605

>TPHA0B01520 Chr2 complement(336164..339616) [3453 bp, 1150 aa] {ON}
           Anc_7.441 YBL105C
          Length = 1150

 Score = 29.6 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 9   LFLLGEGE-SKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPF 67
           L +LG+G   K+ +           I   K+DH + N   A    ++KV   A K +HPF
Sbjct: 826 LKVLGKGNFGKVLLSKSKNTGRVCAIKVLKKDHIIQNHDIASARAEKKVFLLATKTKHPF 885

Query: 68  FARFKLRIQT 77
                   QT
Sbjct: 886 LTNLYCSFQT 895

>YDL148C Chr4 complement(188154..190586) [2433 bp, 810 aa] {ON}
           NOP14Nucleolar protein, forms a complex with Noc4p that
           mediates maturation and nuclear export of 40S ribosomal
           subunits; also present in the small subunit processome
           complex, which is required for processing of pre-18S
           rRNA
          Length = 810

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 44  NLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKT 103
           N ++A+L  +RK      + +  F AR ++  +  E  D    + +  N+I  + GA K 
Sbjct: 738 NKMKAQLKKERKFTMKEIRKDAKFEARQRIEEKNKESSDYHAKMAHIVNTINTEEGAEKN 797

Query: 104 NFETEWNLQ 112
            +E E  L+
Sbjct: 798 KYERERKLR 806

>CAGL0J08844g Chr10 complement(873456..875855) [2400 bp, 799 aa]
           {ON} similar to uniprot|Q99207 Saccharomyces cerevisiae
           YDL148c
          Length = 799

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 44  NLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKT 103
           N ++A+L  +RK +    + +  F AR ++  +  E       + N  N+I  + GA K 
Sbjct: 727 NKMKAQLKKERKFVMKELRKDTKFEARQRIDEKKKEAEAYHSKMSNIINTINTEEGAEKN 786

Query: 104 NFETEWNLQ 112
            +E E  L+
Sbjct: 787 KYEREKRLR 795

>YHL030W Chr8 (40084..45690) [5607 bp, 1868 aa] {ON}  ECM29Scaffold
           protein that assists in association of the proteasome
           core particle with the regulatory particle; degraded by
           the mature proteasome after assembly; contains HEAT-like
           repeats
          Length = 1868

 Score = 28.5 bits (62), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 11  LLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRA--ELLNDR---KVLFAAYKVEH 65
           L  EG  KL++ P T A N  ++  + +  TLG++++   EL++D    + LF + K + 
Sbjct: 397 LHAEGWPKLQLGPQTPAFNTAILQRQLQYETLGDILKRDFELVSDLSYIEFLFESLKNDL 456

Query: 66  PFF 68
           P F
Sbjct: 457 PQF 459

>CAGL0L07810g Chr12 complement(859653..861443) [1791 bp, 596 aa]
           {ON} similar to uniprot|P25333 Saccharomyces cerevisiae
           YCR008w SAT4 serine/threonine-specific protein kinase
          Length = 596

 Score = 27.7 bits (60), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 57  LFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNA-CNSII 95
           L+ A K + PF+ ++    +   GY+P ++LK A C ++I
Sbjct: 503 LWTAAKKDDPFYNKYLQGRRQKSGYEPIESLKRARCRNVI 542

>Smik_4.87 Chr4 complement(165012..167444) [2433 bp, 810 aa] {ON}
           YDL148C (REAL)
          Length = 810

 Score = 27.3 bits (59), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 33/69 (47%)

Query: 44  NLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKT 103
           N ++A+L  +RK      + +  F AR ++  +  E  +    + +  N+I  + GA K 
Sbjct: 738 NKMKAQLKKERKFTMKEIRKDAKFEARQRIEEKNRESSNYHAKMAHIVNTINTEEGAEKN 797

Query: 104 NFETEWNLQ 112
            +E E  L+
Sbjct: 798 KYERERKLR 806

  Database: Seq/AA.fsa
    Posted date:  Aug 24, 2012  3:22 PM
  Number of letters in database: 53,481,399
  Number of sequences in database:  114,666
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 114666
Number of Hits to DB: 13,134,473
Number of extensions: 495678
Number of successful extensions: 1317
Number of sequences better than 10.0: 60
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 60
Length of query: 120
Length of database: 53,481,399
Length adjustment: 89
Effective length of query: 31
Effective length of database: 43,276,125
Effective search space: 1341559875
Effective search space used: 1341559875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)