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Get selected genes'

Hit NameAncStatusLength (aa)HSP LengthHSP ScoreHSP E-value
Skud_4.582singletonON26261144e-10
Skud_5.241singletonON3025955e-07
Smik_9.93singletonON3620763e-04
Smik_47.1singletonON3020670.006
Smik_7.38singletonON5522610.10
Skud_12.295singletonON4113550.67
Skud_61.1singletonON13216551.6
BLASTP 2.2.26 [Sep-21-2011]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Skud_4.582
         (26 letters)

Database: Seq/AA.fsa 
           114,666 sequences; 53,481,399 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Skud_4.582 Chr4 (1037985..1038065) [81 bp, 26 aa] {ON}   (REPEAT)      49   4e-10
Skud_5.241 Chr5 complement(386264..386356) [93 bp, 30 aa] {ON}  ...    41   5e-07
Smik_9.93 Chr9 (175967..176077) [111 bp, 36 aa] {ON}  (REPEAT)         34   3e-04
Smik_47.1 Chr47 complement(1954..2046) [93 bp, 30 aa] {ON}   (RE...    30   0.006
Smik_7.38 Chr7 (69306..69329,69333..69380,69384..69476) [165 bp,...    28   0.10 
Skud_12.295 Chr12 (539485..539607) [123 bp, 41 aa] {ON} YJL007C ...    26   0.67 
Skud_61.1 Chr61 (430..828) [399 bp, 132 aa] {ON} YCR018C-A (REPEAT)    26   1.6  

>Skud_4.582 Chr4 (1037985..1038065) [81 bp, 26 aa] {ON}   (REPEAT)
          Length = 26

 Score = 48.5 bits (114), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/26 (100%), Positives = 26/26 (100%)

Query: 1  SYFFLHFIRLYSLILLHYQSLHFSFH 26
          SYFFLHFIRLYSLILLHYQSLHFSFH
Sbjct: 1  SYFFLHFIRLYSLILLHYQSLHFSFH 26

>Skud_5.241 Chr5 complement(386264..386356) [93 bp, 30 aa] {ON}
          (REPEAT)
          Length = 30

 Score = 41.2 bits (95), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query: 2  YFFLHFIRLYSLILLHYQSLHFSFH 26
          ++ LHFIR YSLILLHYQSLHFSFH
Sbjct: 6  FYILHFIRRYSLILLHYQSLHFSFH 30

>Smik_9.93 Chr9 (175967..176077) [111 bp, 36 aa] {ON}  (REPEAT)
          Length = 36

 Score = 33.9 bits (76), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/20 (90%), Positives = 18/20 (90%)

Query: 7  FIRLYSLILLHYQSLHFSFH 26
          FI  YSLILLHYQSLHFSFH
Sbjct: 17 FICSYSLILLHYQSLHFSFH 36

>Smik_47.1 Chr47 complement(1954..2046) [93 bp, 30 aa] {ON} 
          (REPEAT)
          Length = 30

 Score = 30.4 bits (67), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/20 (80%), Positives = 16/20 (80%)

Query: 7  FIRLYSLILLHYQSLHFSFH 26
          FI  YSLIL HYQSL FSFH
Sbjct: 11 FICCYSLILFHYQSLRFSFH 30

>Smik_7.38 Chr7 (69306..69329,69333..69380,69384..69476) [165 bp,
          55 aa] {ON} YIL060W (REPEAT)
          Length = 55

 Score = 28.1 bits (61), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/22 (72%), Positives = 17/22 (77%)

Query: 5  LHFIRLYSLILLHYQSLHFSFH 26
          L F  L  +ILLHYQSLHFSFH
Sbjct: 34 LSFYILSVIILLHYQSLHFSFH 55

>Skud_12.295 Chr12 (539485..539607) [123 bp, 41 aa] {ON} YJL007C
          (REPEAT)
          Length = 41

 Score = 25.8 bits (55), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 12/13 (92%), Positives = 12/13 (92%)

Query: 14 ILLHYQSLHFSFH 26
          ILLHYQSL FSFH
Sbjct: 29 ILLHYQSLRFSFH 41

>Skud_61.1 Chr61 (430..828) [399 bp, 132 aa] {ON} YCR018C-A
          (REPEAT)
          Length = 132

 Score = 25.8 bits (55), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 5  LHFIRLYSLILLHYQS 20
          L +IR +SL+LLHYQS
Sbjct: 59 LRYIRCHSLVLLHYQS 74

  Database: Seq/AA.fsa
    Posted date:  Aug 24, 2012  3:22 PM
  Number of letters in database: 53,481,399
  Number of sequences in database:  114,666
  
Lambda     K      H
   0.349    0.155    0.517 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 114666
Number of Hits to DB: 2,488,172
Number of extensions: 34107
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 7
Length of query: 26
Length of database: 53,481,399
Length adjustment: 1
Effective length of query: 25
Effective length of database: 53,366,733
Effective search space: 1334168325
Effective search space used: 1334168325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 59 (27.3 bits)