Re-run this search with the SEG filter switched off
Re-run this search as BLASTX i.e. nucleotide queryNOTE: 24 genes in the same pillar as CAGL0K01903g were not hit in these BLAST results
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= CAGL0K01903g (101 letters)
Database: Seq/AA.fsa 114,666 sequences; 53,481,399 total letters
***** No hits found ******
Database: Seq/AA.fsa Posted date: Aug 24, 2012 3:22 PM Number of letters in database: 53,481,399 Number of sequences in database: 114,666 Lambda K H 0.310 0.130 0.355
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 114666 Number of Hits to DB: 1,318,849 Number of extensions: 1952 Number of sequences better than 10.0: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 101 Length of database: 53,481,399 Length adjustment: 72 Effective length of query: 29 Effective length of database: 45,225,447 Effective search space: 1311537963 Effective search space used: 1311537963 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 59 (27.3 bits)