Re-run this search with the SEG filter switched off

Re-run this search as BLASTX i.e. nucleotide query

Get selected genes'

Hit NameAncStatusLength (aa)HSP LengthHSP ScoreHSP E-value
CAGL0E02453g6.30ON1201206271e-85
YOL005C (RPB11)6.30ON1201206063e-82
Smik_15.1656.30ON1201206029e-82
Suva_15.1696.30ON1221206021e-81
Skud_15.1576.30ON1221206021e-81
KAFR0A051106.30ON1221205846e-79
NCAS0D021206.30ON1221185812e-78
KNAG0F029106.30ON1221205752e-77
ZYRO0C07502g6.30ON1221205742e-77
TDEL0G043906.30ON1221205733e-77
Kpol_1037.216.30ON1201205647e-76
NDAI0C026706.30ON1221205631e-75
TBLA0E031506.30ON1181185508e-74
ACL005C6.30ON1221205447e-73
KLTH0C10934g6.30ON1221205379e-72
Kwal_56.224726.30ON1221205352e-71
SAKL0E01562g6.30ON1221205342e-71
TPHA0J004106.30ON1201205264e-70
KLLA0C06160g6.30ON1211185256e-70
TPHA0B029202.163ON1301061305e-10
CAGL0L03872g2.163ON137921306e-10
Kpol_165.22.163ON128921192e-08
TDEL0F011802.163ON129901192e-08
KAFR0B045702.163ON131911166e-08
ZYRO0B09878g2.163ON130901131e-07
TBLA0B012902.163ON102861093e-07
KNAG0I020602.163ON134901104e-07
SAKL0E10692g2.163ON131901104e-07
YNL113W (RPC19)2.163ON1421021096e-07
Ecym_54232.163ON127901087e-07
Smik_14.2142.163ON1421021081e-06
Suva_14.2252.163ON1421041071e-06
AFL220C2.163ON135901035e-06
Skud_14.2182.163ON1561041045e-06
KLTH0D09350g2.163ON146711036e-06
NCAS0G025502.163ON150621029e-06
KLLA0F23760g2.163ON127681019e-06
NDAI0F027502.163ON14990992e-05
Kwal_26.84732.163ON15071993e-05
TBLA0J007305.604ON72689680.76
TPHA0B015207.441ON115070633.5
Smik_6.288.2ON44443624.0
TPHA0K006907.418ON278577625.5
YHL030W (ECM29)4.15ON186863625.5
Skud_4.4628.406ON47795615.8
Kwal_23.58927.257ON67846608.1
BLASTP 2.2.26 [Sep-21-2011]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= CAGL0E02453g
         (120 letters)

Database: Seq/AA.fsa 
           114,666 sequences; 53,481,399 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAGL0E02453g Chr5 complement(233352..233714) [363 bp, 120 aa] {O...   246   1e-85
YOL005C Chr15 complement(315813..316175) [363 bp, 120 aa] {ON}  ...   238   3e-82
Smik_15.165 Chr15 complement(283099..283461) [363 bp, 120 aa] {O...   236   9e-82
Suva_15.169 Chr15 complement(289702..290070) [369 bp, 122 aa] {O...   236   1e-81
Skud_15.157 Chr15 complement(275429..275797) [369 bp, 122 aa] {O...   236   1e-81
KAFR0A05110 Chr1 complement(1014087..1014455) [369 bp, 122 aa] {...   229   6e-79
NCAS0D02120 Chr4 complement(393640..394008) [369 bp, 122 aa] {ON...   228   2e-78
KNAG0F02910 Chr6 complement(551617..551985) [369 bp, 122 aa] {ON...   226   2e-77
ZYRO0C07502g Chr3 complement(567967..568335) [369 bp, 122 aa] {O...   225   2e-77
TDEL0G04390 Chr7 complement(794577..794945) [369 bp, 122 aa] {ON...   225   3e-77
Kpol_1037.21 s1037 complement(44216..44578) [363 bp, 120 aa] {ON...   221   7e-76
NDAI0C02670 Chr3 (621282..621650) [369 bp, 122 aa] {ON} Anc_6.30...   221   1e-75
TBLA0E03150 Chr5 complement(788457..788813) [357 bp, 118 aa] {ON...   216   8e-74
ACL005C Chr3 complement(346569..346937) [369 bp, 122 aa] {ON} Sy...   214   7e-73
KLTH0C10934g Chr3 complement(900683..901051) [369 bp, 122 aa] {O...   211   9e-72
Kwal_56.22472 s56 (144443..144811) [369 bp, 122 aa] {ON} YOL005C...   210   2e-71
SAKL0E01562g Chr5 (120177..120545) [369 bp, 122 aa] {ON} highly ...   210   2e-71
TPHA0J00410 Chr10 (95837..96199) [363 bp, 120 aa] {ON} Anc_6.30 ...   207   4e-70
KLLA0C06160g Chr3 complement(543239..543604) [366 bp, 121 aa] {O...   206   6e-70
TPHA0B02920 Chr2 (666060..666452) [393 bp, 130 aa] {ON} Anc_2.16...    55   5e-10
CAGL0L03872g Chr12 complement(447274..447687) [414 bp, 137 aa] {...    55   6e-10
Kpol_165.2 s165 complement(2511..2897) [387 bp, 128 aa] {ON} com...    50   2e-08
TDEL0F01180 Chr6 (211106..211495) [390 bp, 129 aa] {ON} Anc_2.16...    50   2e-08
KAFR0B04570 Chr2 complement(949880..950275) [396 bp, 131 aa] {ON...    49   6e-08
ZYRO0B09878g Chr2 complement(771644..772036) [393 bp, 130 aa] {O...    48   1e-07
TBLA0B01290 Chr2 (274238..274546) [309 bp, 102 aa] {ON} Anc_2.16...    47   3e-07
KNAG0I02060 Chr9 complement(401412..401816) [405 bp, 134 aa] {ON...    47   4e-07
SAKL0E10692g Chr5 complement(891637..892032) [396 bp, 131 aa] {O...    47   4e-07
YNL113W Chr14 (412771..413199) [429 bp, 142 aa] {ON}  RPC19RNA p...    47   6e-07
Ecym_5423 Chr5 complement(871715..872098) [384 bp, 127 aa] {ON} ...    46   7e-07
Smik_14.214 Chr14 (392413..392841) [429 bp, 142 aa] {ON} YNL113W...    46   1e-06
Suva_14.225 Chr14 (409562..409990) [429 bp, 142 aa] {ON} YNL113W...    46   1e-06
AFL220C Chr6 complement(25281..25688) [408 bp, 135 aa] {ON} Synt...    44   5e-06
Skud_14.218 Chr14 (402879..403349) [471 bp, 156 aa] {ON} YNL113W...    45   5e-06
KLTH0D09350g Chr4 complement(776115..776555) [441 bp, 146 aa] {O...    44   6e-06
NCAS0G02550 Chr7 (456827..457279) [453 bp, 150 aa] {ON} Anc_2.16...    44   9e-06
KLLA0F23760g Chr6 complement(2218555..2218938) [384 bp, 127 aa] ...    44   9e-06
NDAI0F02750 Chr6 complement(673843..674292) [450 bp, 149 aa] {ON...    43   2e-05
Kwal_26.8473 s26 complement(800017..800469) [453 bp, 150 aa] {ON...    43   3e-05
TBLA0J00730 Chr10 (169980..172160) [2181 bp, 726 aa] {ON} Anc_5....    31   0.76 
TPHA0B01520 Chr2 complement(336164..339616) [3453 bp, 1150 aa] {...    29   3.5  
Smik_6.28 Chr6 complement(54289..55623) [1335 bp, 444 aa] {ON} Y...    28   4.0  
TPHA0K00690 Chr11 complement(135928..144285) [8358 bp, 2785 aa] ...    28   5.5  
YHL030W Chr8 (40084..45690) [5607 bp, 1868 aa] {ON}  ECM29Scaffo...    28   5.5  
Skud_4.462 Chr4 complement(819016..820449) [1434 bp, 477 aa] {ON...    28   5.8  
Kwal_23.5892 s23 (1358818..1360854) [2037 bp, 678 aa] {ON} YIL06...    28   8.1  

>CAGL0E02453g Chr5 complement(233352..233714) [363 bp, 120 aa] {ON}
           highly similar to uniprot|P38902 Saccharomyces
           cerevisiae YOL005c RPB11 DNA-directed RNA polymerase II
          Length = 120

 Score =  246 bits (627), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF
Sbjct: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120

>YOL005C Chr15 complement(315813..316175) [363 bp, 120 aa] {ON}
           RPB11RNA polymerase II subunit B12.5; part of central
           core; similar to Rpc19p and bacterial alpha subunit
          Length = 120

 Score =  238 bits (606), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 118/120 (98%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLRIQT EGYDPKDAL+NAC+SIINKLGALK+NFETEWNLQTLAADDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120

>Smik_15.165 Chr15 complement(283099..283461) [363 bp, 120 aa] {ON}
           YOL005C (REAL)
          Length = 120

 Score =  236 bits (602), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 117/120 (97%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLRIQT EGYDPKDAL+NAC+SIINKLGALK+NFETEWNLQTLA DDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLATDDAF 120

>Suva_15.169 Chr15 complement(289702..290070) [369 bp, 122 aa] {ON}
           YOL005C (REAL)
          Length = 122

 Score =  236 bits (602), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 118/120 (98%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKLKI+PDTKAPNAVVITFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIEPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLRIQT EGYDPKDAL+NAC+SIINKLGALK+NFETEWNLQTLAADDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120

>Skud_15.157 Chr15 complement(275429..275797) [369 bp, 122 aa] {ON}
           YOL005C (REAL)
          Length = 122

 Score =  236 bits (602), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 118/120 (98%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKLKI+PDTKAPNAVVITFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIEPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLRIQT EGYDPKDAL+NAC+SIINKLGALK+NFETEWNLQTLAADDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120

>KAFR0A05110 Chr1 complement(1014087..1014455) [369 bp, 122 aa] {ON}
           Anc_6.30 YOL005C
          Length = 122

 Score =  229 bits (584), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 117/120 (97%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTK+PNAVVITFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKSPNAVVITFEKEDHTLGNLIRAELLNDTKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLR+QT+EGYDPK+AL+NAC+SIINKLG LK+NFETEWNLQTLA+D+ F
Sbjct: 61  YKVEHPFFARFKLRVQTIEGYDPKEALKNACNSIINKLGILKTNFETEWNLQTLASDENF 120

>NCAS0D02120 Chr4 complement(393640..394008) [369 bp, 122 aa] {ON}
           Anc_6.30 YOL005C
          Length = 122

 Score =  228 bits (581), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 108/118 (91%), Positives = 116/118 (98%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKL+IDPDTKAPNAVVITFEKEDHTLGNLIR+ELLND++VLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLQIDPDTKAPNAVVITFEKEDHTLGNLIRSELLNDSRVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADD 118
           YKVEHPFFARFKLRIQTVEGYDPKDAL+NAC+SII+KLG LK NFETEWNLQTLAAD+
Sbjct: 61  YKVEHPFFARFKLRIQTVEGYDPKDALKNACNSIISKLGVLKGNFETEWNLQTLAADE 118

>KNAG0F02910 Chr6 complement(551617..551985) [369 bp, 122 aa] {ON}
           Anc_6.30 YOL005C
          Length = 122

 Score =  226 bits (575), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 107/120 (89%), Positives = 114/120 (95%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLG+GESKL IDPDTK+PNA+VITF KEDHTLGNLIRAELLND+KVLFAA
Sbjct: 1   MNAPDRFELFLLGDGESKLVIDPDTKSPNAIVITFNKEDHTLGNLIRAELLNDSKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLRIQTVEGYDPKDAL+NAC+ IINKLG LK+NFETEWNLQTLA DD F
Sbjct: 61  YKVEHPFFARFKLRIQTVEGYDPKDALKNACNGIINKLGILKTNFETEWNLQTLATDDTF 120

>ZYRO0C07502g Chr3 complement(567967..568335) [369 bp, 122 aa] {ON}
           highly similar to uniprot|P38902 Saccharomyces
           cerevisiae YOL005C
          Length = 122

 Score =  225 bits (574), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 115/120 (95%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKL++DPDTKAPNA+V+TFEKEDHTLGNLIRAELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLRVDPDTKAPNAIVVTFEKEDHTLGNLIRAELLNDPKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHP FARFK+RIQT+EGYDPKDAL+NAC+ IINKLG LK+NFETEWNLQTLA+DD F
Sbjct: 61  YKVEHPLFARFKMRIQTMEGYDPKDALKNACNGIINKLGVLKTNFETEWNLQTLASDDNF 120

>TDEL0G04390 Chr7 complement(794577..794945) [369 bp, 122 aa] {ON}
           Anc_6.30 YOL005C
          Length = 122

 Score =  225 bits (573), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 114/120 (95%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKLKI+PDTKAPNAVVITFEKEDHTLGNLIR+ELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIEPDTKAPNAVVITFEKEDHTLGNLIRSELLNDTKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHP FARFK+RIQTVEGYDPKDAL+NAC+ IINKL  LK+NFETEWNLQTLA+DD +
Sbjct: 61  YKVEHPLFARFKMRIQTVEGYDPKDALKNACNGIINKLAVLKTNFETEWNLQTLASDDNY 120

>Kpol_1037.21 s1037 complement(44216..44578) [363 bp, 120 aa] {ON}
           complement(44216..44578) [363 nt, 121 aa]
          Length = 120

 Score =  221 bits (564), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 115/120 (95%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPD+FELFLLGEGESKL I+PDTKAPNAVVITFEKEDHTLGNLIR+ELLND+KVLFAA
Sbjct: 1   MNAPDKFELFLLGEGESKLNIEPDTKAPNAVVITFEKEDHTLGNLIRSELLNDSKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHP FARFKLRIQTVE YDPKDAL+NAC++IINKLG LK+NFETEWNLQTLA+D+ F
Sbjct: 61  YKVEHPLFARFKLRIQTVENYDPKDALKNACNNIINKLGILKTNFETEWNLQTLASDENF 120

>NDAI0C02670 Chr3 (621282..621650) [369 bp, 122 aa] {ON} Anc_6.30
           YOL005C
          Length = 122

 Score =  221 bits (563), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 114/120 (95%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLLGEGESKL IDPDTKAPNAVVITF+KEDHTLGNLIR+ELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLTIDPDTKAPNAVVITFQKEDHTLGNLIRSELLNDGKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHPFFA FKLRIQTVEGYDPK AL+NAC++IINKLG LK+NFETEWNLQTLA+D+ F
Sbjct: 61  YKVEHPFFANFKLRIQTVEGYDPKLALKNACNNIINKLGILKTNFETEWNLQTLASDENF 120

>TBLA0E03150 Chr5 complement(788457..788813) [357 bp, 118 aa] {ON}
           Anc_6.30 YOL005C
          Length = 118

 Score =  216 bits (550), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 111/118 (94%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFE FLLGEGESKL+I+PDTKAPN VVITFEKEDHTLGNLI++ELL+D KVLFAA
Sbjct: 1   MNAPDRFESFLLGEGESKLQIEPDTKAPNTVVITFEKEDHTLGNLIKSELLHDPKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADD 118
           YKVEHP FARFK+RIQTVEGYDPKDALR AC+SII KLG LK+NFETEWNLQTLA+DD
Sbjct: 61  YKVEHPLFARFKMRIQTVEGYDPKDALRKACNSIIKKLGILKTNFETEWNLQTLASDD 118

>ACL005C Chr3 complement(346569..346937) [369 bp, 122 aa] {ON}
           Syntenic homolog of Saccharomyces cerevisiae YOL005C
           (RPB11)
          Length = 122

 Score =  214 bits (544), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 111/120 (92%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLL EGESKLKI+PDTKA NAV+ITFEKEDHTLGN+IRAELL D +VLFAA
Sbjct: 1   MNAPDRFELFLLPEGESKLKIEPDTKAANAVIITFEKEDHTLGNIIRAELLEDERVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHP FARF++RIQT EGYDPK+AL+NAC+SIINKL  LKSNFETEWNLQTLA++D F
Sbjct: 61  YKVEHPLFARFRMRIQTAEGYDPKEALKNACNSIINKLATLKSNFETEWNLQTLASEDQF 120

>KLTH0C10934g Chr3 complement(900683..901051) [369 bp, 122 aa] {ON}
           highly similar to uniprot|P38902 Saccharomyces
           cerevisiae YOL005C
          Length = 122

 Score =  211 bits (537), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 110/120 (91%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLL EGE+KLKIDPDTKAPNAV++TFEKEDHTL NLIR ELL D  VLFAA
Sbjct: 1   MNAPDRFELFLLPEGEAKLKIDPDTKAPNAVIVTFEKEDHTLANLIRGELLEDKGVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHP FA+FKLRIQTVEGYDPKDAL+NAC+ II+KLG L+SNFETEWNLQTLA++D +
Sbjct: 61  YKVEHPLFAQFKLRIQTVEGYDPKDALKNACNGIISKLGQLQSNFETEWNLQTLASEDNY 120

>Kwal_56.22472 s56 (144443..144811) [369 bp, 122 aa] {ON} YOL005C
           (RPB11) - RNA polymerase II subunit, homologous to S.
           pombe Rpb11p subunit [contig 185] FULL
          Length = 122

 Score =  210 bits (535), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 110/120 (91%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLL EGE+KLKIDPDTKAPNAV++TFEKEDHTL NLIRAELL D  VLFAA
Sbjct: 1   MNAPDRFELFLLPEGEAKLKIDPDTKAPNAVIVTFEKEDHTLANLIRAELLEDKGVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHP FA+FK+RIQT EGYDPKDAL+NAC+ II+KLG L+SNFETEWNLQTLA++D +
Sbjct: 61  YKVEHPLFAQFKMRIQTAEGYDPKDALKNACNGIISKLGQLQSNFETEWNLQTLASEDNY 120

>SAKL0E01562g Chr5 (120177..120545) [369 bp, 122 aa] {ON} highly
           similar to uniprot|P38902 Saccharomyces cerevisiae
           YOL005C
          Length = 122

 Score =  210 bits (534), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 111/120 (92%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLL EGESKL I+PDTKAPNAV+ITFEKEDHTLGNLIRAELL D +VLFAA
Sbjct: 1   MNAPDRFELFLLPEGESKLNIEPDTKAPNAVIITFEKEDHTLGNLIRAELLEDQRVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHP FARFK+RIQTVEGYDPKDAL+NAC++II KL  L+SNFETEW+LQTLA+++ +
Sbjct: 61  YKVEHPLFARFKMRIQTVEGYDPKDALKNACNNIITKLAQLQSNFETEWSLQTLASEENY 120

>TPHA0J00410 Chr10 (95837..96199) [363 bp, 120 aa] {ON} Anc_6.30
           YOL005C
          Length = 120

 Score =  207 bits (526), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 109/120 (90%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLL EG+SKL+I+ DTKA NAVVITFEKEDHTLGNLIR ELLND KVLFAA
Sbjct: 1   MNAPDRFELFLLDEGQSKLQIEQDTKAANAVVITFEKEDHTLGNLIRNELLNDEKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADDAF 120
           YKVEHP FARFKLRIQT E YDPKDAL+ AC++IINKLG LK+NF+TEWNLQTLA+DD F
Sbjct: 61  YKVEHPLFARFKLRIQTEENYDPKDALKMACNNIINKLGILKTNFDTEWNLQTLASDDNF 120

>KLLA0C06160g Chr3 complement(543239..543604) [366 bp, 121 aa] {ON}
           highly similar to uniprot|P38902 Saccharomyces
           cerevisiae YOL005C
          Length = 121

 Score =  206 bits (525), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 108/118 (91%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
           MNAPDRFELFLL EGESKLK++ DTKA +A+++TFEKEDHTLGNLIRAELL D  VLFAA
Sbjct: 1   MNAPDRFELFLLPEGESKLKVEQDTKASSAIIVTFEKEDHTLGNLIRAELLEDEGVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFETEWNLQTLAADD 118
           YKVEHP FA+FK+RIQTVEGYDPKDAL+NAC+SIINKL  L+SNFETEWNLQTLA +D
Sbjct: 61  YKVEHPLFAKFKMRIQTVEGYDPKDALKNACNSIINKLAQLQSNFETEWNLQTLATED 118

>TPHA0B02920 Chr2 (666060..666452) [393 bp, 130 aa] {ON} Anc_2.163
           YNL113W
          Length = 130

 Score = 54.7 bits (130), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 2   NAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFA 59
           + P+  E+ +    E K+KI P+  +P+    +F+  +EDHTLGN +R  ++ + +V F 
Sbjct: 18  SVPEVDEVDVNAVDEDKIKILPNATSPDGTSASFQISEEDHTLGNALRHIIMKNPEVEFC 77

Query: 60  AYKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNF 105
            Y + HP      LRIQT       +AL+     +++    ++  F
Sbjct: 78  GYSIPHPSETLLNLRIQTYGNTTAVEALQKGLKDLMDMCDVVEEKF 123

>CAGL0L03872g Chr12 complement(447274..447687) [414 bp, 137 aa] {ON}
           similar to uniprot|P28000 Saccharomyces cerevisiae
           YNL113w RPC19 DNA-directed RNA polymerase I III
          Length = 137

 Score = 54.7 bits (130), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 16  ESKLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKL 73
           ++K+K+ P   + +    +F+  +EDHTLGN +R  ++ + +V F  Y + HP      L
Sbjct: 40  KTKIKLLPQATSEDGTCASFQIAQEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEELLNL 99

Query: 74  RIQTVEGYDPKDALRNACSSIINKLGALKSNF 105
           RIQT       DAL+     +I+   A+K  F
Sbjct: 100 RIQTYGNITAVDALQKGLDDLIDLCDAVKDKF 131

>Kpol_165.2 s165 complement(2511..2897) [387 bp, 128 aa] {ON}
           complement(2511..2897) [387 nt, 129 aa]
          Length = 128

 Score = 50.4 bits (119), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 16  ESKLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKL 73
           E K+KI P   + +    +F+   EDHTLGN +R  ++ + +V F  Y + HP      L
Sbjct: 30  EDKIKILPQATSEDGTCASFQIMDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENLLNL 89

Query: 74  RIQTVEGYDPKDALRNACSSIINKLGALKSNF 105
           RIQT       +AL+     +++    ++  F
Sbjct: 90  RIQTYGSTTAVEALQKGLGDLMDMCDVVEEKF 121

>TDEL0F01180 Chr6 (211106..211495) [390 bp, 129 aa] {ON} Anc_2.163
           YNL113W
          Length = 129

 Score = 50.4 bits (119), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRI 75
           K+K+ P   + +    +F+  +EDHTLGN +R  ++ +  V F  Y + HP      LRI
Sbjct: 33  KIKLLPQASSEDGTCASFQIAEEDHTLGNALRYVIMKNKDVEFCGYSIPHPSENLLNLRI 92

Query: 76  QTVEGYDPKDALRNACSSIINKLGALKSNF 105
           QT       D L+   + +++   A++  F
Sbjct: 93  QTYGATTAVDVLQKGLTDLMDLCDAVEDRF 122

>KAFR0B04570 Chr2 complement(949880..950275) [396 bp, 131 aa] {ON}
           Anc_2.163 YNL113W
          Length = 131

 Score = 49.3 bits (116), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 17  SKLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLR 74
           +K+KI P   + +    +F+  +EDHTLGN +R  ++ + +V F  Y + HP      +R
Sbjct: 34  NKIKILPQATSEDGTSASFQIVEEDHTLGNALRYIIMKNPQVEFCGYSIPHPSENLLNIR 93

Query: 75  IQTVEGYDPKDALRNACSSIINKLGALKSNF 105
           IQT       DAL+   + +++    ++  F
Sbjct: 94  IQTYGEITAVDALKKGLADLMDLCDVVEETF 124

>ZYRO0B09878g Chr2 complement(771644..772036) [393 bp, 130 aa] {ON}
           highly similar to uniprot|Q755Q7 Ashbya gossypii AFL220C
           AFL220Cp and similar to YNL113W uniprot|P28000
           Saccharomyces cerevisiae YNL113W RPC19 RNA polymerase
           subunit common to RNA polymerases I and III
          Length = 130

 Score = 48.1 bits (113), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRI 75
           K+KI P   + +    +F+  +EDHTLGN +R  ++ +  V F  Y + HP      +R+
Sbjct: 34  KIKILPQATSEDGTCASFQIAEEDHTLGNALRYMIMKNPDVEFCGYSIPHPSENLLNIRV 93

Query: 76  QTVEGYDPKDALRNACSSIINKLGALKSNF 105
           QT       D L      +++   A++  F
Sbjct: 94  QTYGNVTAVDVLHKGLQDLMDLCDAVEDKF 123

>TBLA0B01290 Chr2 (274238..274546) [309 bp, 102 aa] {ON} Anc_2.163
           YNL113W
          Length = 102

 Score = 46.6 bits (109), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 38/86 (44%)

Query: 20  KIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRIQTVE 79
           ++ P T   +A       EDHTLGN +R  L+ +  V F  Y + HP      LR+QT  
Sbjct: 10  QLPPVTPDGSAASFQIRDEDHTLGNALRYLLMRNPAVEFCGYSIPHPSEPFLNLRVQTYG 69

Query: 80  GYDPKDALRNACSSIINKLGALKSNF 105
                DAL      +++    ++  F
Sbjct: 70  DITASDALAQGLQDLMDLCDVVEDTF 95

>KNAG0I02060 Chr9 complement(401412..401816) [405 bp, 134 aa] {ON}
           Anc_2.163 YNL113W
          Length = 134

 Score = 47.0 bits (110), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRI 75
           K+KI P+    +    +F+   EDHTLGN +R  ++ + +V F  Y + HP      +RI
Sbjct: 38  KVKILPEATTEDGTCASFQILNEDHTLGNALRYVIMKNPEVEFCGYSIPHPSENWLNVRI 97

Query: 76  QTVEGYDPKDALRNACSSIINKLGALKSNF 105
           QT       DA +     +++    ++  F
Sbjct: 98  QTYGKITAVDAFKKGLGDLMDMCDVVEDVF 127

>SAKL0E10692g Chr5 complement(891637..892032) [396 bp, 131 aa] {ON}
           highly similar to uniprot|P28000 Saccharomyces
           cerevisiae YNL113W RPC19 RNA polymerase subunit common
           to RNA polymerases I and III
          Length = 131

 Score = 47.0 bits (110), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRI 75
           K+K+ P   + +    +F+  +EDHTLGN +R  ++ + +V F  Y + HP      +RI
Sbjct: 35  KIKLLPQATSDDGTSASFQISEEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENLLNVRI 94

Query: 76  QTVEGYDPKDALRNACSSIINKLGALKSNF 105
           QT       +AL+     +++   A++  F
Sbjct: 95  QTYGKITAVEALQKGLQDLMDMCDAVEDKF 124

>YNL113W Chr14 (412771..413199) [429 bp, 142 aa] {ON}  RPC19RNA
           polymerase subunit AC19, common to RNA polymerases I and
           III
          Length = 142

 Score = 46.6 bits (109), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 4   PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAYKV 63
           PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ +  V F  Y +
Sbjct: 42  PDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYVIMKNPDVEFCGYSI 93

Query: 64  EHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNF 105
            HP      +RIQT       DAL+     +++    ++S F
Sbjct: 94  PHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKF 135

>Ecym_5423 Chr5 complement(871715..872098) [384 bp, 127 aa] {ON}
           similar to Ashbya gossypii AFL220C
          Length = 127

 Score = 46.2 bits (108), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRI 75
           K+++ P+  + +    +F+   EDHTLGN +R  ++ + +V F  Y + HP      LRI
Sbjct: 31  KIRLLPEAASEDGTCASFQISDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSETVLNLRI 90

Query: 76  QTVEGYDPKDALRNACSSIINKLGALKSNF 105
           QT       +AL      +++    ++  F
Sbjct: 91  QTYGKMTAVEALHKGLKDLMDLCDVVEDKF 120

>Smik_14.214 Chr14 (392413..392841) [429 bp, 142 aa] {ON} YNL113W
           (REAL)
          Length = 142

 Score = 46.2 bits (108), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 4   PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAYKV 63
           PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ +  V F  Y +
Sbjct: 42  PDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYIIMKNPDVEFCGYSI 93

Query: 64  EHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNF 105
            HP      +RIQT       DAL+     +++    ++S F
Sbjct: 94  PHPSENLLNIRIQTYGESTAVDALQKGLKDLMDLCDVVESKF 135

>Suva_14.225 Chr14 (409562..409990) [429 bp, 142 aa] {ON} YNL113W
           (REAL)
          Length = 142

 Score = 45.8 bits (107), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 2   NAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAY 61
           + PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ + +V F  Y
Sbjct: 40  DEPDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYIIMKNPEVEFCGY 91

Query: 62  KVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNF 105
            + HP      +RIQT       +AL+     +++    ++S F
Sbjct: 92  SIPHPSENLLNVRIQTYGAITAVEALQKGLKDLMDLCDVVESKF 135

>AFL220C Chr6 complement(25281..25688) [408 bp, 135 aa] {ON}
           Syntenic homolog of Saccharomyces cerevisiae YNL113W
           (RPC19)
          Length = 135

 Score = 44.3 bits (103), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRI 75
           K+++ P   + +     F+   EDHTLGN +R  ++ + +V F  Y + HP      +RI
Sbjct: 39  KIRLLPQATSEDGTCAFFQITDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENFLNIRI 98

Query: 76  QTVEGYDPKDALRNACSSIINKLGALKSNF 105
           QT       DAL      +++    ++  F
Sbjct: 99  QTYGKVTAVDALHKGLQDLMDMCDVVEDKF 128

>Skud_14.218 Chr14 (402879..403349) [471 bp, 156 aa] {ON} YNL113W
           (REAL)
          Length = 156

 Score = 44.7 bits (104), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 2   NAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAY 61
           + PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ +  V F  Y
Sbjct: 54  DEPDREKIKLLTQATS----EDGTNASFQIV----EEDHTLGNALRYIIMKNPDVEFCGY 105

Query: 62  KVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNF 105
            + HP      +RIQT       DAL+     +++    +++ F
Sbjct: 106 SIPHPSENLLNIRIQTYGEITAVDALQKGLKDLMDLCDVVEAKF 149

>KLTH0D09350g Chr4 complement(776115..776555) [441 bp, 146 aa] {ON}
           some similarities with uniprot|P28000 Saccharomyces
           cerevisiae YNL113W RPC19 RNA polymerase subunit common
           to RNA polymerases I and III
          Length = 146

 Score = 44.3 bits (103), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 35  FEKEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDALRNACSSI 94
             +EDHTLGN +R  ++ +  V F  Y + HP      LRIQT   +   + L+     +
Sbjct: 69  ISEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETLLNLRIQTYGKFTAVEVLQKGLQDL 128

Query: 95  INKLGALKSNF 105
           ++   A++  F
Sbjct: 129 MDLCDAVEDKF 139

>NCAS0G02550 Chr7 (456827..457279) [453 bp, 150 aa] {ON} Anc_2.163
           YNL113W
          Length = 150

 Score = 43.9 bits (102), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRI 75
           K+KI P+  + +    +F+   EDHTLGN +R  ++ +  V F  Y + HP      +RI
Sbjct: 54  KVKILPEGASEDGTCASFQIVDEDHTLGNALRYIIMKNPNVEFCGYSIPHPSENFLNVRI 113

Query: 76  QT 77
           QT
Sbjct: 114 QT 115

>KLLA0F23760g Chr6 complement(2218555..2218938) [384 bp, 127 aa]
           {ON} similar to uniprot|P28000 Saccharomyces cerevisiae
           YNL113W RPC19 RNA polymerase subunit common to RNA
           polymerases I and III
          Length = 127

 Score = 43.5 bits (101), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 38  EDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINK 97
           EDHTLGN +R  ++ + +V F  Y + HP      +RIQT       +AL      +++ 
Sbjct: 53  EDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKGLGDLMDM 112

Query: 98  LGALKSNF 105
             A++  F
Sbjct: 113 CDAVEDRF 120

>NDAI0F02750 Chr6 complement(673843..674292) [450 bp, 149 aa] {ON}
           Anc_2.163 YNL113W
          Length = 149

 Score = 42.7 bits (99), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 18  KLKIDPDTKAPNAVVITFE--KEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRI 75
           K+KI     + +    +F+  +EDHTLGN +R  ++ + +V F  Y + HP      +RI
Sbjct: 53  KIKILQQGASEDGCSASFQILQEDHTLGNALRYIIMKNPQVEFCGYSIPHPSEEFLNIRI 112

Query: 76  QTVEGYDPKDALRNACSSIINKLGALKSNF 105
           QT       +AL      +++    ++  F
Sbjct: 113 QTYGEITAVEALHKGLQDLMDLCDVVEEKF 142

>Kwal_26.8473 s26 complement(800017..800469) [453 bp, 150 aa] {ON}
           YNL113W (RPC19) - subunit common to RNA polymerases I
           (A) and III (C) [contig 61] FULL
          Length = 150

 Score = 42.7 bits (99), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 35  FEKEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDALRNACSSI 94
             +EDHTLGN +R  ++ +  V F  Y + HP      LRIQT   +   + L+     +
Sbjct: 73  ISEEDHTLGNSLRYIIMKNPDVEFCGYSIPHPSENLLNLRIQTYGKHTALEVLQKGLQDL 132

Query: 95  INKLGALKSNF 105
           ++   A++  F
Sbjct: 133 MDLCDAVEDKF 143

>TBLA0J00730 Chr10 (169980..172160) [2181 bp, 726 aa] {ON} Anc_5.604
           YOR022C
          Length = 726

 Score = 30.8 bits (68), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 40  HTLGNLIRAELLNDNKVLFAAYKVEHPFF-----ARFKLRIQTVEGYDPKDALRNACSSI 94
           H+LGNLI  +LLN+ K     +KV + F        FKL  +T       D + N     
Sbjct: 499 HSLGNLILFDLLNNTKKYSLNFKVGNYFCLGSPAGVFKLIQRT-----NIDGINNKAGKE 553

Query: 95  INKLGALKSNFETE---WNLQTLAADDAF 120
           + K   LK  ++ E   W  QTL   + +
Sbjct: 554 LGKRKKLKQKYQLEIDNWQTQTLPCKELY 582

>TPHA0B01520 Chr2 complement(336164..339616) [3453 bp, 1150 aa] {ON}
           Anc_7.441 YBL105C
          Length = 1150

 Score = 28.9 bits (63), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 9   LFLLGEGE-SKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAYKVEHPF 67
           L +LG+G   K+ +           I   K+DH + N   A    + KV   A K +HPF
Sbjct: 826 LKVLGKGNFGKVLLSKSKNTGRVCAIKVLKKDHIIQNHDIASARAEKKVFLLATKTKHPF 885

Query: 68  FARFKLRIQT 77
                   QT
Sbjct: 886 LTNLYCSFQT 895

>Smik_6.28 Chr6 complement(54289..55623) [1335 bp, 444 aa] {ON}
           YFL048C (REAL)
          Length = 444

 Score = 28.5 bits (62), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 5/43 (11%)

Query: 24  DTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAYKVEHP 66
           D+  P+ + +T++ ED+   NL++ ++  DN+V F   KV  P
Sbjct: 184 DSSVPSTIRVTYDMEDN---NLLKVQV--DNRVCFQTRKVRFP 221

>TPHA0K00690 Chr11 complement(135928..144285) [8358 bp, 2785 aa] {ON}
            Anc_7.418 YBL088C
          Length = 2785

 Score = 28.5 bits (62), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 34   TFEKEDHTLGNLIR--AELLNDNKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDALRNAC 91
            ++E+ D    N I+     + DN++    Y +   FF +   ++Q     +  D L+N C
Sbjct: 2109 SYERADDIFNNYIKDINITIRDNEIRSEIYYIFGEFFNK---QVQKFIKTNEYDRLKNKC 2165

Query: 92   SSIINKLGALKSNFETE 108
            S   ++L ALK+ +  E
Sbjct: 2166 SVSYSELQALKTIYSNE 2182

>YHL030W Chr8 (40084..45690) [5607 bp, 1868 aa] {ON}  ECM29Scaffold
           protein that assists in association of the proteasome
           core particle with the regulatory particle; degraded by
           the mature proteasome after assembly; contains HEAT-like
           repeats
          Length = 1868

 Score = 28.5 bits (62), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 11  LLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRA--ELLND---NKVLFAAYKVEH 65
           L  EG  KL++ P T A N  ++  + +  TLG++++   EL++D    + LF + K + 
Sbjct: 397 LHAEGWPKLQLGPQTPAFNTAILQRQLQYETLGDILKRDFELVSDLSYIEFLFESLKNDL 456

Query: 66  PFF 68
           P F
Sbjct: 457 PQF 459

>Skud_4.462 Chr4 complement(819016..820449) [1434 bp, 477 aa] {ON}
           YDR198C (REAL)
          Length = 477

 Score = 28.1 bits (61), Expect = 5.8,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 24/95 (25%)

Query: 49  ELLNDNKVLFAAYKVEHPFFA----------------------RFKLRIQT-VEGYDPKD 85
           EL+ND+K     + VEH ++                       R K R+Q  +EGY  +D
Sbjct: 356 ELINDDKEEVKTFLVEHDYWGDYTINGGDISYRILVALSYYLTRDKRRVQKFIEGYISED 415

Query: 86  ALRNACSSIINK-LGALKSNFETEWNLQTLAADDA 119
             +   SSI+   L  L   F    N  T  AD+A
Sbjct: 416 YFKPKISSILKVLLAGLSVKFTETLNQLTKQADNA 450

>Kwal_23.5892 s23 (1358818..1360854) [2037 bp, 678 aa] {ON} YIL067C
           - Hypothetical ORF [contig 11] FULL
          Length = 678

 Score = 27.7 bits (60), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 41  TLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDA 86
           T G+L+R E  N  K    AY  EHP    +++   T + ++  DA
Sbjct: 547 TRGSLLRGEAGNSWKPPVLAYNQEHPHLLNWQVTNSTEKSFEKLDA 592

  Database: Seq/AA.fsa
    Posted date:  Aug 24, 2012  3:22 PM
  Number of letters in database: 53,481,399
  Number of sequences in database:  114,666
  
Lambda     K      H
   0.319    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 114666
Number of Hits to DB: 13,139,182
Number of extensions: 502100
Number of successful extensions: 1289
Number of sequences better than 10.0: 56
Number of HSP's gapped: 1289
Number of HSP's successfully gapped: 56
Length of query: 120
Length of database: 53,481,399
Length adjustment: 89
Effective length of query: 31
Effective length of database: 43,276,125
Effective search space: 1341559875
Effective search space used: 1341559875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)