Hit NameLength (aa)HSP LengthHSP ScoreHSP Significance
YER159C (BUR6)1421416915e-95
CAGL0I08635g1391103772e-47
KLLA0C11935g150903713e-46
AGR156C127863607e-45
Scas_576.1*90893514e-44
Kwal_56.23401109973526e-44
Sklu_1568.1127853512e-43
Kwal_26.6856138791233e-09
ADR391W145791182e-08
YOR358W (HAP5)242791142e-07
KLLA0A03696g156791095e-07
Sklu_2404.2164791095e-07
Scas_663.18219761072e-06
CAGL0K09900g201791043e-06
Kwal_27.1099913286893e-04
CAGL0C04411g13186883e-04
Scas_482.111086864e-04
Kwal_27.1159913186874e-04
CAGL0K11440g13186874e-04
YDR225W (HTA1)13286866e-04
YBL003C (HTA2)13286866e-04
Scas_721.8313286866e-04
Sklu_1763.113286867e-04
Sklu_890.113186850.001
AEL003C13186850.001
KLLA0F13332g13086840.001
KLLA0E17413g13086840.001
AGR184W17586850.001
Sklu_913.118177840.002
KLLA0F01859g16675830.002
YBR278W (DPB3)20180680.25
AEL159W18381660.43
Scas_644.713175621.1
ACL017C13379611.5
Kwal_56.2251713478611.5
KLLA0C05918g13278611.5
Sklu_1188.113479602.1
YOL012C (HTZ1)13478575.6
Scas_678.468068586.2
Scas_682.6149849578.9
BLASTP 2.2.26 [Sep-21-2011]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= YER159C
         (141 letters)

Database: blastdb 
           34,618 sequences; 16,596,109 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YER159C (BUR6) [1588] chr5 complement(491525..491953) Alpha subu...   270   5e-95
CAGL0I08635g complement(842539..842958) no similarity, hypotheti...   149   2e-47
KLLA0C11935g complement(1026490..1026942) some similarities with...   147   3e-46
AGR156C [4467] [Homologous to ScYER159C (BUR6) - SH] (1042863..1...   143   7e-45
Scas_576.1*                                                           139   4e-44
Kwal_56.23401                                                         140   6e-44
Sklu_1568.1 YER159C, Contig c1568 2406-2789 reverse complement        139   2e-43
Kwal_26.6856                                                           52   3e-09
ADR391W [2132] [Homologous to ScYOR358W (HAP5) - SH] complement(...    50   2e-08
YOR358W (HAP5) [5135] chr15 (1010157..1010885) Component (with H...    49   2e-07
KLLA0A03696g complement(334065..334535) similar to sp|Q02516 Sac...    47   5e-07
Sklu_2404.2 YOR358W, Contig c2404 859-1353 reverse complement          47   5e-07
Scas_663.18                                                            46   2e-06
CAGL0K09900g 968269..968874 similar to sp|Q02516 Saccharomyces c...    45   3e-06
Kwal_27.10999                                                          39   3e-04
CAGL0C04411g 426015..426410 highly similar to sp|P04911 Saccharo...    39   3e-04
Scas_482.1                                                             38   4e-04
Kwal_27.11599                                                          38   4e-04
CAGL0K11440g complement(1111362..1111757) highly similar to sp|P...    38   4e-04
YDR225W (HTA1) [1061] chr4 (915522..915920) Histone H2A, nearly ...    38   6e-04
YBL003C (HTA2) [191] chr2 complement(235359..235757) Histone H2A...    38   6e-04
Scas_721.83                                                            38   6e-04
Sklu_1763.1 YDR225W, Contig c1763 299-697 reverse complement           38   7e-04
Sklu_890.1 , Contig c890 480-875 reverse complement                    37   0.001
AEL003C [2503] [Homologous to ScYBL003C (HTA2) - SH] (631732..63...    37   0.001
KLLA0F13332g 1230744..1231136 some similarities with sp|P04911 S...    37   0.001
KLLA0E17413g 1539714..1540106 some similarities with sp|P04911 S...    37   0.001
AGR184W [4495] [Homologous to ScYDR225W (HTA1) - SH] complement(...    37   0.001
Sklu_913.1 YJL065C, Contig c913 1211-1756                              37   0.002
KLLA0F01859g 170883..171383 some similarities with sp|P40366 Sac...    37   0.002
YBR278W (DPB3) [456] chr2 (760252..760857) DNA polymerase epsilo...    31   0.25 
AEL159W [2347] [Homologous to ScYJL065C - SH; ScYBR278W (DPB3) -...    30   0.43 
Scas_644.7                                                             28   1.1  
ACL017C [1032] [Homologous to ScYOL012C (HTZ1) - SH] (330555..33...    28   1.5  
Kwal_56.22517                                                          28   1.5  
KLLA0C05918g complement(522995..523393) similar to sp|Q12692 Sac...    28   1.5  
Sklu_1188.1 YOL012C, Contig c1188 570-974 reverse complement           28   2.1  
YOL012C (HTZ1) [4804] chr15 complement(303579..303983) Histone-r...    27   5.6  
Scas_678.4                                                             27   6.2  
Scas_682.6                                                             27   8.9  

>YER159C (BUR6) [1588] chr5 complement(491525..491953) Alpha subunit
           of NC2 (Dr1/Drap1) regulator of class II transcription,
           contains a histone fold domain [429 bp, 142 aa]
          Length = 142

 Score =  270 bits (691), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 135/141 (95%), Positives = 135/141 (95%)

Query: 1   MADQVPVTTQLPPIKPEHEVPLDAGGSPVGNMGTXXXXXXELGDVFDRIKTHFPPAKVKK 60
           MADQVPVTTQLPPIKPEHEVPLDAGGSPVGNMGT      ELGDVFDRIKTHFPPAKVKK
Sbjct: 1   MADQVPVTTQLPPIKPEHEVPLDAGGSPVGNMGTNSNNNNELGDVFDRIKTHFPPAKVKK 60

Query: 61  IMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILKKTILNDEK 120
           IMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILKKTILNDEK
Sbjct: 61  IMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILKKTILNDEK 120

Query: 121 FDFLREGLCVEEGQTQPEEES 141
           FDFLREGLCVEEGQTQPEEES
Sbjct: 121 FDFLREGLCVEEGQTQPEEES 141

>CAGL0I08635g complement(842539..842958) no similarity, hypothetical
           start
          Length = 139

 Score =  149 bits (377), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 86/110 (78%)

Query: 20  VPLDAGGSPVGNMGTXXXXXXELGDVFDRIKTHFPPAKVKKIMQTDEDIGKVSQATPVIA 79
           V  + G S   +         E  +VF++IKTHFPPAKVKKIMQ+DEDIGKVSQATPVI 
Sbjct: 17  VGTEVGASVGASAEVSAEAKDETTEVFEKIKTHFPPAKVKKIMQSDEDIGKVSQATPVIT 76

Query: 80  GRSLEFFIALLVKKSGEMARGQGTKRITAEILKKTILNDEKFDFLREGLC 129
           GRSLEFF+ALLVKKSG+MAR +G KRITA++L+ TIL DE+FDFLRE +C
Sbjct: 77  GRSLEFFMALLVKKSGDMARQRGMKRITADVLRDTILEDERFDFLRESIC 126

>KLLA0C11935g complement(1026490..1026942) some similarities with
           sp|P40096 Saccharomyces cerevisiae YER159c NCB1
           functional homolog of human NC2alpha singleton,
           hypothetical start
          Length = 150

 Score =  147 bits (371), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 81/90 (90%)

Query: 43  GDVFDRIKTHFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQG 102
            +VFD+IKTHFPPAK+KKIMQTDEDIGKVSQATPVI GRSLEFFIALLV KS ++AR QG
Sbjct: 60  AEVFDKIKTHFPPAKIKKIMQTDEDIGKVSQATPVITGRSLEFFIALLVDKSSKVARDQG 119

Query: 103 TKRITAEILKKTILNDEKFDFLREGLCVEE 132
           +KRI+A+I+KKTIL DEKFDFLRE +  +E
Sbjct: 120 SKRISADIMKKTILTDEKFDFLREVILPQE 149

>AGR156C [4467] [Homologous to ScYER159C (BUR6) - SH]
           (1042863..1043246) [384 bp, 127 aa]
          Length = 127

 Score =  143 bits (360), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 78/86 (90%)

Query: 46  FDRIKTHFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           FD+IKTHFPPAK+KKIMQTDEDIGKVSQATPVI GRSLEFFIA+LV KS +MA+ QG+KR
Sbjct: 17  FDKIKTHFPPAKIKKIMQTDEDIGKVSQATPVITGRSLEFFIAMLVDKSSQMAKEQGSKR 76

Query: 106 ITAEILKKTILNDEKFDFLREGLCVE 131
           I+ +I+KKTI+ DEKFDFLRE +C E
Sbjct: 77  ISGDIMKKTIMADEKFDFLREIVCPE 102

>Scas_576.1*
          Length = 90

 Score =  139 bits (351), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 80/89 (89%), Gaps = 1/89 (1%)

Query: 41  ELGDVFDRIKTHFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARG 100
           EL +VFDR+KTHFPPAKVK I+Q+ +DIGKV QATPVIAGR+LEFFIALLVKKSG++AR 
Sbjct: 3   ELKEVFDRLKTHFPPAKVK-ILQSYDDIGKVFQATPVIAGRALEFFIALLVKKSGDVARK 61

Query: 101 QGTKRITAEILKKTILNDEKFDFLREGLC 129
            GTKRITA++LK+TIL DEK DFLRE +C
Sbjct: 62  NGTKRITADVLKQTILTDEKLDFLRENVC 90

>Kwal_56.23401
          Length = 109

 Score =  140 bits (352), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 79/97 (81%)

Query: 44  DVFDRIKTHFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGT 103
           +VF  IKTHFPPAK+KKIMQTDEDIGKVSQATPVI GRSLEFFIA+LV +SG +A+  G 
Sbjct: 8   EVFGNIKTHFPPAKIKKIMQTDEDIGKVSQATPVITGRSLEFFIAMLVNRSGHVAKEMGC 67

Query: 104 KRITAEILKKTILNDEKFDFLREGLCVEEGQTQPEEE 140
           +RI+ E++KKTI+ DEKFDFLRE +C E      +EE
Sbjct: 68  RRISGEVMKKTIMTDEKFDFLRELICGEHASKPTDEE 104

>Sklu_1568.1 YER159C, Contig c1568 2406-2789 reverse complement
          Length = 127

 Score =  139 bits (351), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 75/85 (88%)

Query: 45  VFDRIKTHFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTK 104
           VF +IKTHFPPAKVKKIMQTDEDIGKVSQATPVI GRSLEFFIALLV KS ++AR  G K
Sbjct: 13  VFTKIKTHFPPAKVKKIMQTDEDIGKVSQATPVITGRSLEFFIALLVSKSSDVAREMGCK 72

Query: 105 RITAEILKKTILNDEKFDFLREGLC 129
           RI+ +++KKTI+ DEKFDFLRE +C
Sbjct: 73  RISGDVMKKTIMTDEKFDFLREIVC 97

>Kwal_26.6856
          Length = 138

 Score = 52.0 bits (123), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 47  DRIKTH-FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           D  K+H  P A++KK+M+TDED+  +S   P++  ++ E FI  L  ++  +A     + 
Sbjct: 51  DDFKSHSLPLARIKKVMKTDEDVRMISAEAPILFAKACEIFITELTMRAWCIAEEHKRRT 110

Query: 106 ITAEILKKTILNDEKFDFL 124
           +    + + +L  + FDFL
Sbjct: 111 LQKSDIAQALLKSDMFDFL 129

>ADR391W [2132] [Homologous to ScYOR358W (HAP5) - SH]
           complement(1410823..1411260) [438 bp, 145 aa]
          Length = 145

 Score = 50.1 bits (118), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 47  DRIKTH-FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           D  K+H  P A++KK+M+TDED+  +S   P++  ++ E FI  L  ++  +A     + 
Sbjct: 58  DDFKSHSLPLARIKKVMKTDEDVKMISAEAPILFAKACEIFITELTMRAWCIAEENKRRT 117

Query: 106 ITAEILKKTILNDEKFDFL 124
           +  + + + +   + FDFL
Sbjct: 118 LQKQDIAQALQKSDMFDFL 136

>YOR358W (HAP5) [5135] chr15 (1010157..1010885) Component (with
           Hap2p, Hap3p, and Hap4p) of heterotrimeric CCAAT-binding
           factor [729 bp, 242 aa]
          Length = 242

 Score = 48.5 bits (114), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 47  DRIKTH-FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           D  K+H  P A+++K+M+TDED+  +S   P+I  ++ E FI  L  ++  +A     + 
Sbjct: 153 DDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRT 212

Query: 106 ITAEILKKTILNDEKFDFL 124
           +    + + +   + FDFL
Sbjct: 213 LQKADIAEALQKSDMFDFL 231

>KLLA0A03696g complement(334065..334535) similar to sp|Q02516
           Saccharomyces cerevisiae YOR358w HAP5 CCAAT-binding
           factor subunit singleton, hypothetical start
          Length = 156

 Score = 46.6 bits (109), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 47  DRIKTH-FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           D  K+H  P A++KK+M+TDE++  +S   P++  ++ E FI  L  ++  +A     + 
Sbjct: 69  DDFKSHSLPLARIKKVMKTDEEVRMISGEAPILFAKACEIFITELTMRAWCVAEENKRRT 128

Query: 106 ITAEILKKTILNDEKFDFL 124
           +  + +   +   + FDFL
Sbjct: 129 LQKQDIADALQKSDMFDFL 147

>Sklu_2404.2 YOR358W, Contig c2404 859-1353 reverse complement
          Length = 164

 Score = 46.6 bits (109), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 47  DRIKTH-FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           D  ++H  P A++KK+M+TDED+  +S   P++  ++ E F+  L  ++  +A     + 
Sbjct: 76  DDFRSHSLPLARIKKVMKTDEDVRMISAEAPILFAKACEIFVTELTMRAWCVAEESKRRT 135

Query: 106 ITAEILKKTILNDEKFDFL 124
           +    + + +   + FDFL
Sbjct: 136 LQKADIAEALQKSDMFDFL 154

>Scas_663.18
          Length = 219

 Score = 45.8 bits (107), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRI----TA 108
            P A+++K+M+TDED+  +S   P+I  ++ E FI  L  ++  +A     + +     A
Sbjct: 135 LPFARIRKVMKTDEDVRMISAEVPIIFAKACEIFITELTMRAWCVAENNRRRTLQKADIA 194

Query: 109 EILKKTILNDEKFDFL 124
           E LKK     + +DFL
Sbjct: 195 EALKKC----DMYDFL 206

>CAGL0K09900g 968269..968874 similar to sp|Q02516 Saccharomyces
           cerevisiae YOR358w HAP5 CCAAT-binding factor subunit,
           hypothetical start
          Length = 201

 Score = 44.7 bits (104), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 47  DRIKTH-FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           D  K+H  P A+++++M+TDE++  +S   P+I  ++ E FI  L  ++  +A     + 
Sbjct: 107 DDFKSHSLPFARIRRVMKTDEEVKMISAEAPIIFAKACEVFITELTMRAWCVAEKHKRRT 166

Query: 106 ITAEILKKTILNDEKFDFL 124
           +    + + +   + FDFL
Sbjct: 167 LQKADIAEALQMSDMFDFL 185

>Kwal_27.10999
          Length = 132

 Score = 38.9 bits (89), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      +V    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 27  FPVGRVHRLLRRGNYAQRVGSGAPVYMTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 86

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 87  LAIRNDDELNKLLGNVTIAQGGVLPN 112

>CAGL0C04411g 426015..426410 highly similar to sp|P04911
           Saccharomyces cerevisiae YDR225w HTA1 or sp|P04912
           Saccharomyces cerevisiae YBL003c HTA2, start by
           similarity
          Length = 131

 Score = 38.5 bits (88), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 27  FPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQ 86

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 87  LAIRNDDELNKLLGNVTIAQGGVLPN 112

>Scas_482.1
          Length = 110

 Score = 37.7 bits (86), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 5   FPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 64

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 65  LAIRNDDELNKLLGNVTIAQGGVLPN 90

>Kwal_27.11599
          Length = 131

 Score = 38.1 bits (87), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      +V    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 26  FPVGRVHRLLRRGNYAQRVGSGAPVYMTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 86  LAIRNDDELNKLLGNVTIAQGGVLPN 111

>CAGL0K11440g complement(1111362..1111757) highly similar to
           sp|P04911 Saccharomyces cerevisiae YDR225w HTA1 or
           sp|P04912 Saccharomyces cerevisiae YBL003c HTA2, start
           by similarity
          Length = 131

 Score = 38.1 bits (87), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 27  FPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQ 86

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 87  LAIRNDDELNKLLGNVTIAQGGVLPN 112

>YDR225W (HTA1) [1061] chr4 (915522..915920) Histone H2A, nearly
           identical to Hta2p [399 bp, 132 aa]
          Length = 132

 Score = 37.7 bits (86), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 27  FPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 86

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 87  LAIRNDDELNKLLGNVTIAQGGVLPN 112

>YBL003C (HTA2) [191] chr2 complement(235359..235757) Histone H2A,
           nearly identical to Hta1p [399 bp, 132 aa]
          Length = 132

 Score = 37.7 bits (86), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 27  FPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 86

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 87  LAIRNDDELNKLLGNVTIAQGGVLPN 112

>Scas_721.83
          Length = 132

 Score = 37.7 bits (86), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 27  FPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 86

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 87  LAIRNDDELNKLLGNVTIAQGGVLPN 112

>Sklu_1763.1 YDR225W, Contig c1763 299-697 reverse complement
          Length = 132

 Score = 37.7 bits (86), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 27  FPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 86

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 87  LAIRNDDELNKLLGNVTIAQGGVLPN 112

>Sklu_890.1 , Contig c890 480-875 reverse complement
          Length = 131

 Score = 37.4 bits (85), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 26  FPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 86  LAIRNDDELNKLLGNVTIAQGGVLPN 111

>AEL003C [2503] [Homologous to ScYBL003C (HTA2) - SH]
           (631732..632127) [396 bp, 131 aa]
          Length = 131

 Score = 37.4 bits (85), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 26  FPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 86  LAIRNDDELNKLLGNVTIAQGGVLPN 111

>KLLA0F13332g 1230744..1231136 some similarities with sp|P04911
           Saccharomyces cerevisiae YDR225w HTA1 histone H2A,
           hypothetical start
          Length = 130

 Score = 37.0 bits (84), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 26  FPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 86  LAIRNDDELNKLLGNVTIAQGGVLPN 111

>KLLA0E17413g 1539714..1540106 some similarities with sp|P04911
           Saccharomyces cerevisiae YDR225w HTA1 histone H2A,
           hypothetical start
          Length = 130

 Score = 37.0 bits (84), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 26  FPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 86  LAIRNDDELNKLLGNVTIAQGGVLPN 111

>AGR184W [4495] [Homologous to ScYDR225W (HTA1) - SH]
           complement(1095987..1096514) [528 bp, 175 aa]
          Length = 175

 Score = 37.4 bits (85), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILK 112
           FP  +V ++++      ++    PV     LE+  A +++ +G  AR     RI    L+
Sbjct: 70  FPVGRVHRLLRKGNYAQRIGSGAPVYMTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 129

Query: 113 KTILNDEKFDFLREGLCVEEGQTQPE 138
             I ND++ + L   + + +G   P 
Sbjct: 130 LAIRNDDELNKLLGNVTIAQGGVLPN 155

>Sklu_913.1 YJL065C, Contig c913 1211-1756
          Length = 181

 Score = 37.0 bits (84), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 52  HFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKS---GEMARGQG-TKRIT 107
           H P +K K+I +TD D    SQA  V    + E FI   V+++    ++ +    + R+T
Sbjct: 18  HLPVSKCKRIAKTDPDCILTSQAAYVATAFATELFIQNFVEEAMLVSQLEKNNAKSVRLT 77

Query: 108 AEILKKTILNDEKFDFL 124
            + L K +   +KF FL
Sbjct: 78  YDNLAKCVSRLDKFIFL 94

>KLLA0F01859g 170883..171383 some similarities with sp|P40366
           Saccharomyces cerevisiae YJL065c singleton, hypothetical
           start
          Length = 166

 Score = 36.6 bits (83), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMA---RGQGTKRITAE 109
            P +K KKI +TD +    SQA       + E FI +L +++  +A   +   T R+  E
Sbjct: 11  IPISKCKKIARTDPEYILTSQAAFAATAFTTELFIQMLAEETCSLAQIHKQTKTLRLNYE 70

Query: 110 ILKKTILNDEKFDFL 124
            L   I N +KF FL
Sbjct: 71  DLSTAIRNLDKFQFL 85

>YBR278W (DPB3) [456] chr2 (760252..760857) DNA polymerase epsilon
           third subunit [606 bp, 201 aa]
          Length = 201

 Score = 30.8 bits (68), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 53  FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMA----RGQGTKRITA 108
           FP +KVKKI + D +    S         + E F+  LV++S  +A    +G+ + R++ 
Sbjct: 12  FPISKVKKIAKCDPEYVITSNVAISATAFAAELFVQNLVEESLVLAQLNSKGKTSLRLSL 71

Query: 109 EILKKTILNDEKFDFLREGL 128
             +++ +   + F FL + +
Sbjct: 72  NSIEECVEKRDNFRFLEDAI 91

>AEL159W [2347] [Homologous to ScYJL065C - SH; ScYBR278W (DPB3) -
           SH] complement(333197..333748) [552 bp, 183 aa]
          Length = 183

 Score = 30.0 bits (66), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 52  HFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQ--------GT 103
             P +K K+I +TD D    +QA  +    + E F+  + + +  MA+ Q          
Sbjct: 12  RLPISKCKRIAKTDPDYIMTTQAAYIATAFATELFVQAISEDA--MAQAQLDGRRAGGRA 69

Query: 104 KRITAEILKKTILNDEKFDFL 124
            R+T   L +++  +E++ FL
Sbjct: 70  ARLTYNDLARSVAREERYAFL 90

>Scas_644.7
          Length = 131

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 53  FPPAKVKKIMQTDEDIGKV---SQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAE 109
           FP  ++K+ ++ +   GKV   S+A   +    LE+  A +++ +G  A+    KRIT  
Sbjct: 32  FPVGRIKRYLKRNAS-GKVRVGSKAAIYLTA-VLEYLTAEVLELAGNAAKDLKVKRITPR 89

Query: 110 ILKKTILNDEKFDFL 124
            L+  I  D++ D L
Sbjct: 90  HLQLAIRGDDELDSL 104

>ACL017C [1032] [Homologous to ScYOL012C (HTZ1) - SH]
           (330555..330956) [402 bp, 133 aa]
          Length = 133

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 48  RIKTHFPPAKVKKIMQTDEDIGK--VSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           R    FP  ++K+ ++ +   GK  V     +     LE+  A +++ +G  A+    KR
Sbjct: 28  RAGLQFPVGRIKRYLKKNA-AGKTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKR 86

Query: 106 ITAEILKKTILNDEKFDFL 124
           IT   L+  I  D++ D L
Sbjct: 87  ITPRHLQLAIRGDDELDSL 105

>Kwal_56.22517
          Length = 134

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 48  RIKTHFPPAKVKKIMQTDE-DIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRI 106
           R    FP  ++K+ ++ +     +V   + +     LE+  A +++ +G  A+    KRI
Sbjct: 28  RAGLQFPVGRIKRYLKRNAAGRTRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87

Query: 107 TAEILKKTILNDEKFDFL 124
           T   L+  I  D++ D L
Sbjct: 88  TPRHLQLAIRGDDELDTL 105

>KLLA0C05918g complement(522995..523393) similar to sp|Q12692
           Saccharomyces cerevisiae YOL012c HTZ1 evolutionarily
           conserved member of the histone H2A F/Z family of
           histone variants, start by similarity
          Length = 132

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 48  RIKTHFPPAKVKKIMQTDE-DIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRI 106
           R    FP  +VK+ ++ +     +V     +     LE+  A +++ +G  A+    KRI
Sbjct: 28  RAGLQFPVGRVKRYLKRNAAGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87

Query: 107 TAEILKKTILNDEKFDFL 124
           T   L+  I  D++ D L
Sbjct: 88  TPRHLQLAIRGDDELDSL 105

>Sklu_1188.1 YOL012C, Contig c1188 570-974 reverse complement
          Length = 134

 Score = 27.7 bits (60), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 48  RIKTHFPPAKVKKIMQTDEDIGK--VSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKR 105
           R    FP  ++K+ ++ +   GK  V     +     LE+  A +++ +G  A+    KR
Sbjct: 28  RAGLQFPVGRIKRYLKKNA-AGKTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKR 86

Query: 106 ITAEILKKTILNDEKFDFL 124
           IT   L+  I  D++ D L
Sbjct: 87  ITPRHLQLAIRGDDELDTL 105

>YOL012C (HTZ1) [4804] chr15 complement(303579..303983)
           Histone-related protein, involved in silencing, required
           for GAL gene induction [405 bp, 134 aa]
          Length = 134

 Score = 26.6 bits (57), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 48  RIKTHFPPAKVKKIMQTDE-DIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRI 106
           R    FP  ++K+ ++       +V     +     LE+  A +++ +G  A+    KRI
Sbjct: 28  RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87

Query: 107 TAEILKKTILNDEKFDFL 124
           T   L+  I  D++ D L
Sbjct: 88  TPRHLQLAIRGDDELDSL 105

>Scas_678.4
          Length = 680

 Score = 26.9 bits (58), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 7   VTTQLPPIKPEHEVPLDAGGSPVGNMGTXXXXXXELGDVFDRIKTHFPPAKVKKIMQTDE 66
           V   L P  P   VP+D G   + N+        ++ +      TH    K+KK MQ D 
Sbjct: 504 VADTLQPNTPHKPVPMDIGKESIANL-------DKIRNANGSRSTHEISMKMKKTMQKDV 556

Query: 67  DIGKVSQA 74
            + +  ++
Sbjct: 557 SVFRTQES 564

>Scas_682.6
          Length = 1498

 Score = 26.6 bits (57), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 83   LEFFIALLVKKSGEMARGQGTKRITA--EILKKTILNDEKFDFLREGLC 129
            LE F    V +  +  R  G  +  +  + LKK +L ++K +F+ +G+C
Sbjct: 1163 LESFFDFFVLEEKKSIRKAGVDKTLSSNKSLKKDLLREQKTEFINDGVC 1211

  Database: blastdb
    Posted date:  Apr 3, 2006  3:33 PM
  Number of letters in database: 16,596,109
  Number of sequences in database:  34,618
  
Lambda     K      H
   0.314    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 34618
Number of Hits to DB: 4,402,792
Number of extensions: 158502
Number of successful extensions: 284
Number of sequences better than 10.0: 41
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 41
Length of query: 141
Length of database: 16,596,109
Length adjustment: 91
Effective length of query: 50
Effective length of database: 13,445,871
Effective search space: 672293550
Effective search space used: 672293550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)