MUSCLE (3.8) multiple sequence alignment

KNAG0B00820        -----------------------MKMRCPSRGTAVEQGLSKGRDRPDTSSTISFVGTMGL
TBLA0C04470        -----------------------------------MYDINELETS--------------W
KAFR0C01950        ----------------------------------MEMDMANLREE--------------F
CAGL0I10538g       ------------------------------------MNLEDYNEK--------------L
TPHA0D04240        ------------------------------------MDMVSLIDE--------------F
KLLA0E04643g       MNILRYLPGDRKCSPYLNATNHIVNWTQADNKYSKMNDLMEIEKK--------------L
ZYRO0D10032g       --------------------------MAIKGSQGSQMDLDQFIKD--------------F
Kpol_480.15        ----------------------------------MNMEIKEALEE--------------F
Ecym_1239          ------------------------------------MDIDDISSR--------------L
AFR308W            ------------------------------------MGIEDINRR--------------L
TDEL0D05580        ------------------------------------MDLESIENR--------------F
SAKL0F02816g       ------------------------------------MDLTDLLGK--------------L
KLTH0F14784g       ------------------------------------MDLNKYADR--------------L
Kwal_55.21226      ------------------------------------MDLSKYADR--------------L
NDAI0G00950        ---------------------------------MKQEELDVYEEN--------------L
NCAS0E00820        -----------------------------------MIDLEGYSRK--------------L
Suva_7.417         ------------------------------------MDLEELGNK--------------L
Skud_7.440         ------------------------------------MELDKLDQK--------------L
Smik_6.225         ------------------------------------MNLDQLEQR--------------L
YGR129W            ------------------------------------MDFYKLDEK--------------L
                                                         :                     

KNAG0B00820        TELRDKFKTLSQESQRLRVRIRKQQAEVEKPKVYSLQAAEPSVDGIDG-------AEVVD
TBLA0C04470        KTLKEKAENTRINNQHFLTSLRDKSATNNKPKVYSMTDEFDKDELPIN-DENARKNHSEE
KAFR0C01950        RDLRKKCREIKIENRKLI-------SIASKPKTYSIREEEIGAEVSDE--------DEDD
CAGL0I10538g       KLLKKSVQDIKIRNRNLLKQEAEEKEKGLKPRVYSMHDDEDDSDEKRS-------SDEQS
TPHA0D04240        KVLKKQALDSLIEDRKFLEADEKERKSVLKPKVYSINMDDDGDGDAGD-----DLLTNNS
KLLA0E04643g       KSLRKQKVEVSIRNKKAIIAEEKK---NSERRVYSMADDGEDKARSNK--------SEPE
ZYRO0D10032g       NALKKKSWEISVENRKLVNAESKELAAGRKPRVYQLEAPEPSLP------------TQDD
Kpol_480.15        KRLKRKAVDILIENRKLLDANTRELKKNSKPKTYSMEELAEDDTVN----------TGTV
Ecym_1239          RRLKSKRVDISIKNRKEIVSEEVLQVGRSKPEVYSINDEGAAVNEVQS--------TSNT
AFR308W            RQLKKKRVDASIRNRKEAASEERARLAEGKPRVYSMAEEPADEAEADD--------TQSE
TDEL0D05580        KDLKKRSVDVAIQIRKIAEREAKDESLVGKPKIYSMEDTNEMGTRPVD--------SSER
SAKL0F02816g       KYLKRKGVDVSVKNRKEAEKEEKQAKQSGKPKVYSMNEDETFKDQ-----------KEED
KLTH0F14784g       KNLKRKGVSLSVKNKQQILQEEKQTSARAKPAVYSMKTEEAPSSE-----------TTEE
Kwal_55.21226      KNLKRKRIDLSVKNKNEVIREEKMVSASRKPAVYSMNAEGAEEEI-----------AKDV
NDAI0G00950        KALKRSVLDIITENRKRADQEVKEKSQSSKPKVYDIKAVEDDDNHHTDYDGLGDFSNEEE
NCAS0E00820        KELKRKAQDATIENRLLVDRESKDIESSGKPRVYNMQDDQDNQLETQE--------EDAD
Suva_7.417         KELKRRRVDASLKTRKLADREIQEASSNRKPRVYSMEDASDDELVRE---------TKSD
Skud_7.440         KVLKRKGVNVSIKNRKLADREIQEAGLNRKPKVYSMEDVNDGAEPVED--------AETS
Smik_6.225         KELKKKRVNVSIKNRKLADREIQEANVNRKPRVYNMEDINDVDESVGY--------TESS
YGR129W            KELKRKRVDVSIKSRKLADREIQEVSANRKPRVYSMEDVNDADESVGD--------TESP
                     *.          .              :   *.:                        

KNAG0B00820        NVTVKLLNTPLRQLEAREARRGENG-DDAVARVEG-----DRVAKDTYKKELALLG----
TBLA0C04470        ERISKLMNYTLREYKDWELKQNEYTTESQTNSKDDQIESLDSLAKRTYDKDIRKLN----
KAFR0C01950        SEIIKLLTKPLREFET-EAHVAENK---------------EDIDRLTYNKEVMSLG----
CAGL0I10538g       DMRTNLFQYTVQDFIDWEKRQQRKK-KSKLESKSG--MRLQHLAKNTYDKELQNLP----
TPHA0D04240        ER--ALLTYTIRDYEEWEESLKRKHKNVTNTSTSS--SSQQQTAKFTYDKEIHRMK----
KLLA0E04643g       DP-IKLANYSIREYEKWEAKTQNSR----HNKSVM--GDFQTIAKNSYKKEVDALP----
ZYRO0D10032g       KHGNQLMNYTIQQYEEWNSRQRDQT-----NKRDS--GNLQDMAKYTYDKELNKLH----
Kpol_480.15        DEADRLLNYSIREYEEWEKKQGRHKENVHVTKSSV--NSTAQIAKFTYDKQIKKLQ----
Ecym_1239          ER-RKLLNYSLIDYEKWDEKEKQAN-------FDG--TYSGDIAYSTYKNEIKQLR----
AFR308W            Q--LKLLNYRIADYEKWDEKQKRHK-----QPSDG--ADLGELANSTYRSELHQLH----
TDEL0D05580        RR-LKLMNYSMREYEEWDKKQKGKE-----VKRGG--ANVQELAKYSYEKDLSRSK----
SAKL0F02816g       TR-GKLLNYSIKDYEKWQLKRTAKL-----KNSDG--SSQQDLAKYTYDKEIREME----
KLTH0F14784g       SKEAKLLQYSMKDFEQWQDKERRKS----QKSSDV--AKYQDLAKFTYDKEVQQLR----
Kwal_55.21226      TEANKLLKYSMLEYEQWQDKVKKNS----HRLEGG--ASFQDLAKSTYDKEVQQLS----
NDAI0G00950        KRKFKLMNYTIREYEEWDKQQKDKQ----RKRVDG--SDLTELATFTYEKELSKLN----
NCAS0E00820        DKVAKLMNYTLRQYEEWEKKQKDKK-----IKDDS--SDMKQLAMFSYDKGVSNLN----
Suva_7.417         DK-DRAFHYTVQEYNAWEQKQKQRK--SGKTQGTG--NSYDQLAKLSYDKTLRNLT--TQ
Skud_7.440         DK-DKAFHYTVQEYNAWKQKQNQRK--NGQGQRSG--NSYDQVAKLSYEKTLRNLV--TQ
Smik_6.225         DK-DRAFHYTAQEYIAWEQRHHQRK--IGQSKRSG--ISYDQLAKLSYEKTLRNLA--TQ
YGR129W            EK-EKAFHYTVQEYDAWERRHPQGK--TGQSQRGG--ISYDQLAKLSYEKTLRNLATQTQ
                               :    .                            :* . :        

KNAG0B00820        ---------------RKSTRGTYR-----------------DNVERLVTHLNDVSKKRYL
TBLA0C04470        ---KALRATNSGNKSNKPGKIIKN---HRNESNKIVIKDDKFLVEELVNNLKTKSDRLYK
KAFR0C01950        -------------------------------------KREKRDVESLVSEMNRISDERYK
CAGL0I10538g       --------RPEFKMKAKETQFRIN-----KDSGKVNIKDNKELVQRLSQNLKETAKQRYD
TPHA0D04240        -KRQGKFATDEEITRGSAMKEVLD-------DGKLLIKDDKHLVNGFISDINKVSNDRYI
KLLA0E04643g       ------------KDISHPLKGGIT------EDGKVQVEDNPELVEKMVNDLNERSKKRYM
ZYRO0D10032g       --------KDTMLQNRYTNGGSIQKMNRNPKTGKLTIKDDDQLVKKLAKDMDKTATERYE
Kpol_480.15        ------KQKSTNDNRGKISKIRKD-----PKTGKIVVNDSKQLIKQLAEDLNQTTKERYD
Ecym_1239          ---------KGGLTKGKITKGRIS------ESGKVAIEDEKELVNKLAQTLEKTSRERFL
AFR308W            ---------RRGVVKGRATNGRIS------ASGKVVLDDEPELVEKLAAAVQQTAKRRHE
TDEL0D05580        -----------QNNGNRVVKISTD-----AKTNRLQVKDDEKLVNKLANDLKKTTRERFL
SAKL0F02816g       --------KDGSLNRGKVTKARLN------GKGRIQINDDKKSLEQLADNLNKSTKRRYI
KLTH0F14784g       --------KNYTNKVEKPKKVSIN------KKGKIVVKDDPHLVGSLADSLNKTANERYA
Kwal_55.21226      --------KIDGNRVNKNTKYRVN------NKGKIVVEDDQQLVTGLVETLNKTADERYA
NDAI0G00950        -------SKLENISHEQKHQIGVN-----TRNGKLNVKDEERLLNNLVNNLNETAKKRYM
NCAS0E00820        ------RFRTDKTTTEREVQIQVN-----SKTGKVNIQDEKKLVNDLAKNLTKTANKRYM
Suva_7.417         NYGKHESSVNEKDSKGSLGKSRIEKIQKNSITGKIRIVDDDELVNKLASTLESDSKKRHD
Skud_7.440         NSNKNENSVNKNDSNSSPKNGAIHKIQRNIKTGKIEIVDDDKLVNKLAFTLESESKKRYE
Smik_6.225         DLSEYDNFVNEKDHKNISKISRIDRIQKDTKTGKIRIADDHKLVNKLAVSLESESKKRYE
YGR129W            NSSKQDSSADEEDNKNVPKKGRIGKVQKDTKTGKITIADDDKLVNKLAVSLQSESKKRYE
                                                              :  :   :   :   . 

KNAG0B00820        VRKNKMKRQGARGGSSLD------GYINEKNKQFNKKLQRNGPST-------
TBLA0C04470        HLGE----RRKNYSTTLS------GHVNTKNQEFNEKLTREWKKLSNSIDHI
KAFR0C01950        KGAQ----KRRRLKDTER------GFINEQNKAFNLRLEKEKENGKK-----
CAGL0I10538g       SNRKI---ANDKEHTSLS------GSINAKNLQFNKSLDDDHEAEK------
TPHA0D04240        KRMKLNAVNNDATGSKVSHDKGKTSYNNAKNKDFNDKLEG------------
KLLA0E04643g       VRKQKL--DKQNKINLDD------GFINDKNKRFNAKLNSEFK---------
ZYRO0D10032g       ARRREMERSNVQNASSGG------GYINEKNKQFNEKLDRQMPQSP------
Kpol_480.15        RTNQKR--QKNSDQNENY------SYINEKNKEFNDKLERQETKLLKDIN--
Ecym_1239          REKKRLD-GHKANTSELG------NFVNEKNRHFNEKLSRQFKELGP-----
AFR308W            ERQKK---AAKDGGRATA------GSLNDKNRHFNEKLDREFRKRGQ-----
TDEL0D05580        ARKKDM--EKADARATPG------GYINEKNKQFNLKLDRQMKETER-----
SAKL0F02816g       ERKKQ---AEKLDSSTTG------GFINDKNKQFNEKLSRQFKQFDDN----
KLTH0F14784g       RIEKKI--HRQMVSDTPG------GFINEKNKQFNDKIERQTKKREEN----
Kwal_55.21226      RIQKKI--GRQMNNTTSG------GYINEKNKQFNDKLERQTKKRETED---
NDAI0G00950        VRKKKL--QSKASSDIAG------NYFKDKNKQFNEKLERELKERDNGGD--
NCAS0E00820        VTKKKL--DARSKDSSAE------GYINERNKHFNEKLDRESRYGEEQN---
Suva_7.417         ARKRQM--ENVKTPSGVE------SFINDKNKQFNEKLGRESRGSE------
Skud_7.440         ARRKQM--ENAKTPSSVE------SFINDKNKQFNEKLSREPKDSN------
Smik_6.225         ARKRQM--ESAVIPSGVE------SFINDKNKQFNEKLSRESRNSE------
YGR129W            ARKRQM--QNAKTLYGVE------SFINDKNKQFNEKLSRESKGSE------
                                           .  : .*  **  :              

FASTA FORMAT for MUSCLE Version 3.6

>KNAG0B00820
-----------------------MKMRCPSRGTAVEQGLSKGRDRPDTSSTISFVGTMGL
TELRDKFKTLSQESQRLRVRIRKQQAEVEKPKVYSLQAAEPSVDGIDG-------AEVVD
NVTVKLLNTPLRQLEAREARRGENG-DDAVARVEG-----DRVAKDTYKKELALLG----
---------------RKSTRGTYR-----------------DNVERLVTHLNDVSKKRYL
VRKNKMKRQGARGGSSLD------GYINEKNKQFNKKLQRNGPST-------
>TBLA0C04470
-----------------------------------MYDINELETS--------------W
KTLKEKAENTRINNQHFLTSLRDKSATNNKPKVYSMTDEFDKDELPIN-DENARKNHSEE
ERISKLMNYTLREYKDWELKQNEYTTESQTNSKDDQIESLDSLAKRTYDKDIRKLN----
---KALRATNSGNKSNKPGKIIKN---HRNESNKIVIKDDKFLVEELVNNLKTKSDRLYK
HLGE----RRKNYSTTLS------GHVNTKNQEFNEKLTREWKKLSNSIDHI
>KAFR0C01950
----------------------------------MEMDMANLREE--------------F
RDLRKKCREIKIENRKLI-------SIASKPKTYSIREEEIGAEVSDE--------DEDD
SEIIKLLTKPLREFET-EAHVAENK---------------EDIDRLTYNKEVMSLG----
-------------------------------------KREKRDVESLVSEMNRISDERYK
KGAQ----KRRRLKDTER------GFINEQNKAFNLRLEKEKENGKK-----
>CAGL0I10538g
------------------------------------MNLEDYNEK--------------L
KLLKKSVQDIKIRNRNLLKQEAEEKEKGLKPRVYSMHDDEDDSDEKRS-------SDEQS
DMRTNLFQYTVQDFIDWEKRQQRKK-KSKLESKSG--MRLQHLAKNTYDKELQNLP----
--------RPEFKMKAKETQFRIN-----KDSGKVNIKDNKELVQRLSQNLKETAKQRYD
SNRKI---ANDKEHTSLS------GSINAKNLQFNKSLDDDHEAEK------
>TPHA0D04240
------------------------------------MDMVSLIDE--------------F
KVLKKQALDSLIEDRKFLEADEKERKSVLKPKVYSINMDDDGDGDAGD-----DLLTNNS
ER--ALLTYTIRDYEEWEESLKRKHKNVTNTSTSS--SSQQQTAKFTYDKEIHRMK----
-KRQGKFATDEEITRGSAMKEVLD-------DGKLLIKDDKHLVNGFISDINKVSNDRYI
KRMKLNAVNNDATGSKVSHDKGKTSYNNAKNKDFNDKLEG------------
>KLLA0E04643g
MNILRYLPGDRKCSPYLNATNHIVNWTQADNKYSKMNDLMEIEKK--------------L
KSLRKQKVEVSIRNKKAIIAEEKK---NSERRVYSMADDGEDKARSNK--------SEPE
DP-IKLANYSIREYEKWEAKTQNSR----HNKSVM--GDFQTIAKNSYKKEVDALP----
------------KDISHPLKGGIT------EDGKVQVEDNPELVEKMVNDLNERSKKRYM
VRKQKL--DKQNKINLDD------GFINDKNKRFNAKLNSEFK---------
>ZYRO0D10032g
--------------------------MAIKGSQGSQMDLDQFIKD--------------F
NALKKKSWEISVENRKLVNAESKELAAGRKPRVYQLEAPEPSLP------------TQDD
KHGNQLMNYTIQQYEEWNSRQRDQT-----NKRDS--GNLQDMAKYTYDKELNKLH----
--------KDTMLQNRYTNGGSIQKMNRNPKTGKLTIKDDDQLVKKLAKDMDKTATERYE
ARRREMERSNVQNASSGG------GYINEKNKQFNEKLDRQMPQSP------
>Kpol_480.15
----------------------------------MNMEIKEALEE--------------F
KRLKRKAVDILIENRKLLDANTRELKKNSKPKTYSMEELAEDDTVN----------TGTV
DEADRLLNYSIREYEEWEKKQGRHKENVHVTKSSV--NSTAQIAKFTYDKQIKKLQ----
------KQKSTNDNRGKISKIRKD-----PKTGKIVVNDSKQLIKQLAEDLNQTTKERYD
RTNQKR--QKNSDQNENY------SYINEKNKEFNDKLERQETKLLKDIN--
>Ecym_1239
------------------------------------MDIDDISSR--------------L
RRLKSKRVDISIKNRKEIVSEEVLQVGRSKPEVYSINDEGAAVNEVQS--------TSNT
ER-RKLLNYSLIDYEKWDEKEKQAN-------FDG--TYSGDIAYSTYKNEIKQLR----
---------KGGLTKGKITKGRIS------ESGKVAIEDEKELVNKLAQTLEKTSRERFL
REKKRLD-GHKANTSELG------NFVNEKNRHFNEKLSRQFKELGP-----
>AFR308W
------------------------------------MGIEDINRR--------------L
RQLKKKRVDASIRNRKEAASEERARLAEGKPRVYSMAEEPADEAEADD--------TQSE
Q--LKLLNYRIADYEKWDEKQKRHK-----QPSDG--ADLGELANSTYRSELHQLH----
---------RRGVVKGRATNGRIS------ASGKVVLDDEPELVEKLAAAVQQTAKRRHE
ERQKK---AAKDGGRATA------GSLNDKNRHFNEKLDREFRKRGQ-----
>TDEL0D05580
------------------------------------MDLESIENR--------------F
KDLKKRSVDVAIQIRKIAEREAKDESLVGKPKIYSMEDTNEMGTRPVD--------SSER
RR-LKLMNYSMREYEEWDKKQKGKE-----VKRGG--ANVQELAKYSYEKDLSRSK----
-----------QNNGNRVVKISTD-----AKTNRLQVKDDEKLVNKLANDLKKTTRERFL
ARKKDM--EKADARATPG------GYINEKNKQFNLKLDRQMKETER-----
>SAKL0F02816g
------------------------------------MDLTDLLGK--------------L
KYLKRKGVDVSVKNRKEAEKEEKQAKQSGKPKVYSMNEDETFKDQ-----------KEED
TR-GKLLNYSIKDYEKWQLKRTAKL-----KNSDG--SSQQDLAKYTYDKEIREME----
--------KDGSLNRGKVTKARLN------GKGRIQINDDKKSLEQLADNLNKSTKRRYI
ERKKQ---AEKLDSSTTG------GFINDKNKQFNEKLSRQFKQFDDN----
>KLTH0F14784g
------------------------------------MDLNKYADR--------------L
KNLKRKGVSLSVKNKQQILQEEKQTSARAKPAVYSMKTEEAPSSE-----------TTEE
SKEAKLLQYSMKDFEQWQDKERRKS----QKSSDV--AKYQDLAKFTYDKEVQQLR----
--------KNYTNKVEKPKKVSIN------KKGKIVVKDDPHLVGSLADSLNKTANERYA
RIEKKI--HRQMVSDTPG------GFINEKNKQFNDKIERQTKKREEN----
>Kwal_55.21226
------------------------------------MDLSKYADR--------------L
KNLKRKRIDLSVKNKNEVIREEKMVSASRKPAVYSMNAEGAEEEI-----------AKDV
TEANKLLKYSMLEYEQWQDKVKKNS----HRLEGG--ASFQDLAKSTYDKEVQQLS----
--------KIDGNRVNKNTKYRVN------NKGKIVVEDDQQLVTGLVETLNKTADERYA
RIQKKI--GRQMNNTTSG------GYINEKNKQFNDKLERQTKKRETED---
>NDAI0G00950
---------------------------------MKQEELDVYEEN--------------L
KALKRSVLDIITENRKRADQEVKEKSQSSKPKVYDIKAVEDDDNHHTDYDGLGDFSNEEE
KRKFKLMNYTIREYEEWDKQQKDKQ----RKRVDG--SDLTELATFTYEKELSKLN----
-------SKLENISHEQKHQIGVN-----TRNGKLNVKDEERLLNNLVNNLNETAKKRYM
VRKKKL--QSKASSDIAG------NYFKDKNKQFNEKLERELKERDNGGD--
>NCAS0E00820
-----------------------------------MIDLEGYSRK--------------L
KELKRKAQDATIENRLLVDRESKDIESSGKPRVYNMQDDQDNQLETQE--------EDAD
DKVAKLMNYTLRQYEEWEKKQKDKK-----IKDDS--SDMKQLAMFSYDKGVSNLN----
------RFRTDKTTTEREVQIQVN-----SKTGKVNIQDEKKLVNDLAKNLTKTANKRYM
VTKKKL--DARSKDSSAE------GYINERNKHFNEKLDRESRYGEEQN---
>Suva_7.417
------------------------------------MDLEELGNK--------------L
KELKRRRVDASLKTRKLADREIQEASSNRKPRVYSMEDASDDELVRE---------TKSD
DK-DRAFHYTVQEYNAWEQKQKQRK--SGKTQGTG--NSYDQLAKLSYDKTLRNLT--TQ
NYGKHESSVNEKDSKGSLGKSRIEKIQKNSITGKIRIVDDDELVNKLASTLESDSKKRHD
ARKRQM--ENVKTPSGVE------SFINDKNKQFNEKLGRESRGSE------
>Skud_7.440
------------------------------------MELDKLDQK--------------L
KVLKRKGVNVSIKNRKLADREIQEAGLNRKPKVYSMEDVNDGAEPVED--------AETS
DK-DKAFHYTVQEYNAWKQKQNQRK--NGQGQRSG--NSYDQVAKLSYEKTLRNLV--TQ
NSNKNENSVNKNDSNSSPKNGAIHKIQRNIKTGKIEIVDDDKLVNKLAFTLESESKKRYE
ARRKQM--ENAKTPSSVE------SFINDKNKQFNEKLSREPKDSN------
>Smik_6.225
------------------------------------MNLDQLEQR--------------L
KELKKKRVNVSIKNRKLADREIQEANVNRKPRVYNMEDINDVDESVGY--------TESS
DK-DRAFHYTAQEYIAWEQRHHQRK--IGQSKRSG--ISYDQLAKLSYEKTLRNLA--TQ
DLSEYDNFVNEKDHKNISKISRIDRIQKDTKTGKIRIADDHKLVNKLAVSLESESKKRYE
ARKRQM--ESAVIPSGVE------SFINDKNKQFNEKLSRESRNSE------
>YGR129W
------------------------------------MDFYKLDEK--------------L
KELKRKRVDVSIKSRKLADREIQEVSANRKPRVYSMEDVNDADESVGD--------TESP
EK-EKAFHYTVQEYDAWERRHPQGK--TGQSQRGG--ISYDQLAKLSYEKTLRNLATQTQ
NSSKQDSSADEEDNKNVPKKGRIGKVQKDTKTGKITIADDDKLVNKLAVSLQSESKKRYE
ARKRQM--QNAKTLYGVE------SFINDKNKQFNEKLSRESKGSE------